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Combine multiple wildcards in Snakemake...

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How to choose the second wildcard for a rule depending on the first?...

Is it possible in Snakemake to have "optional" wildcard or part of the filename?...

Mix shell command in environment conda with python scripts in snakemake tool...

How to use Snakemake container for htslib (bgzip + tabix)...

How to use singularity and conda wrappers in Snakemake...

Input vs Output: Job completed successfully, but some output files are missing...

How to write rules for software with version specific shell calls? (E.g. Samtools 1.3.1 and 0.1.18)...

snakemake job submission in sequential manner...

snakemake use both --keep-going and --stats...

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Execute a Snakemake workflow via Tibanna on AWS...

combine to outputs of diffrent rules in Snakemake...

Run Snakemake rule one sample at a time...

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Rule-specific wildcards in Snakemake...

WildcardError - No values given for wildcard - Snakemake...