Is it possible in Snakemake to have "optional" wildcard or part of the filename?...

Mix shell command in environment conda with python scripts in snakemake tool...

How to use Snakemake container for htslib (bgzip + tabix)...

How to use singularity and conda wrappers in Snakemake...

Input vs Output: Job completed successfully, but some output files are missing...

How to write rules for software with version specific shell calls? (E.g. Samtools 1.3.1 and 0.1.18)...

snakemake job submission in sequential manner...

snakemake use both --keep-going and --stats...

Snakemake: MissingInputException with inconsistent naming scheme...

Execute a Snakemake workflow via Tibanna on AWS...

combine to outputs of diffrent rules in Snakemake...

Run Snakemake rule one sample at a time...

lambda wildcards not working in BWA MEM (or BWA-MEM2) Snakemake wrapper(s)...

Rule-specific wildcards in Snakemake...

WildcardError - No values given for wildcard - Snakemake...

Dynamic output in snakemake...

Snakemake: how to create rule without explicit output file, and only with specified input, and log f...

Can I stop a rule in snakefile being parallel executed...

Snakemake: temp files lead to immediate failure in repeated rule attempts...

multiqc on RSeQC clipping_profiles...

snakemake workflow broken by a rule that produces multiple files...

Snakemake using input files in different folders summarizing by name...

Snakemake, RNA-seq : How can I execute one subpart of a pipeline or another subpart based on the cha...

tabular configuration snakemake...

How to check if my code runs inside a SLURM environment?...

problem with snakemake submitting jobs with multiple wildcard on SGE...

Recommended way to do multiple shell commands with shell()...

Snakemake with Singularity...

Snakemake change conda activation command to 'conda activate'...

snakemake envvars are not passed to cluster execution (snakemake throws an error)...