bioinformatics Examples and Free Source Code

Failed to load expression data from Geodataset in R...

r bioinformatics

How to select files in subdirectories by name and move all files containing "XXX" and &quo...

ubuntu unix bioinformatics

Multiple variables in input and output using wildcards snakemake...

ubuntu unix command-line-interface bioinformatics snakemake

How to enable "output" to detect variables in "run" in snakemake...

ubuntu bioinformatics snakemake

Reverse complement of DNA strand using Python...

python list bioinformatics biopython dna-sequence

Not getting any output even though there are no errors...

python bioinformatics biopython

Is there a way to make two scatter density plots share the same legend in R...

r ggplot2 visualization bioinformatics

config file taking it as literal string snakemake...

unix bioinformatics snakemake

Ignoring Sample Information when Making VCF with Freebayes...

bioinformatics vcf-variant-call-format

Is there a way I can use snakemake to generate files based on sequence in a list?...

python ubuntu bioinformatics snakemake

fastq-dump.3.1.1 err: item not found while constructing within virtual database module - the path &#...

ubuntu bioinformatics snakemake

Snakemake how to move files created to a new directory of same name...

ubuntu bioinformatics snakemake

Dataframe Expansion: Generating Genomic Positions +/- 250 Nucleotides...

python pandas dataframe numpy bioinformatics

Create regex-like (run length encoding) of string s for blocks of a given length k...

python string bioinformatics encode rle

extract sequences from multifasta file by ID in file using awk...

search awk bioinformatics multiline fasta

How do I loop through mgz files and convert them to nii files using a shell script and freesurfer?...

linux bash shell bioinformatics

Getting namespace from a obo-formatted text file...

r unix bioinformatics genetics genomics

Error with BiocParallel. No barcodes files found...

r bioinformatics bioconductor

Count the number of lines and characters in a file separated by a specific character...

awk bioinformatics fasta

awk merging files where col value is in range...

awk bioinformatics bed

Find row index of elements in a matrix <0.001, excluding certain rows...

matlab matrix bioinformatics

Error in breseq during running bowtie2...

bioinformatics genome sequencing variants

Read FASTA into a dataframe and extract subsequences of FASTA file...

r subset bioinformatics fasta

get first value of a dot separated string (Bash)...

linux string bash shell bioinformatics

Filter rows in an R tidy data frame based on same-column values that are located in different rows...

r filter tidyverse subset bioinformatics

using cytoscape on server...

server bioinformatics cytoscape

'DisallowedHost' Exception using Selenium to access website...

python selenium-webdriver bioinformatics

How to plot the free energy landscape of protein structure?...

python bioinformatics protein-database

Including Variables like Age, Ethnicity etc in Design Matrix with Paired Samples (EdgeR)...

r bioinformatics

Coding variables a,b,c to match variable x from another data point...

r bioinformatics data-manipulation