fastq Examples and Free Source Code

How to get a base file name from a path without multiple extensions...

python string path fastq

BASH Find Exec Custom Function...

bash fastq

How to extract sequence from a fastq file and save as new file for each sequence...

awk fastq

Extracting ID and sequence from a FASTQ file...

awk sed text-manipulation fastq

Parallelizing python script with a python wrapper...

python parallel-processing bioinformatics joblib fastq

Adding retry to shell script...

shell fastq ncbi common-workflow-language

Create dictionary using 3 lines as values...

python python-2.7 iterator fastq

Snakemake use different wildcards in a rule...

python-3.x wildcard snakemake fastq

Converting FASTQ to FASTA with SED/AWK...

awk sed bioinformatics fasta fastq

Nextflow Units file specified is not found. Please provide a valid file...

bioinformatics fastq nextflow

Explanation of a code about lineIndex , to collect reads from a file...

python database string graph fastq

how to produce multiple readlength.tsv at once from multiple fastq files?...

bash loops fastq sbatch

How to extract unique read IDs from a fastq file?...

uniq fastq ids

using printf to include both variable output and command...

bash unix printf fastq

Divide output of wc-l by 4 in a for loop in bash?...

bash shell pipe divide fastq

How to loop over multiple folders to concatenate FastQ files?...

bash loops concatenation sequence fastq

How to search and replace using Regex s/ when having to convert genome quality to ASCII?...

regex perl bioinformatics fasta fastq

Snakemake How to design downstream rules on empty output files?...

snakemake fastq

How to merge zcat and bzcat in a single function...

linux bash gzip bzip2 fastq

Concatenate multiple sets of 2 fastq files in BASH...

bash for-loop bioinformatics cat fastq

rename fastq file headers using sed command...

sed fastq

How to enable kmer plot for fastQC up from v. 0.11.6...

bioinformatics fastq sequencing

Split fasta file into specific new fasta files...

java split fasta createfile fastq

How to trim every nth line?...

bash awk cut fastq

Hot to trim every nth line by a different value?...

awk trim cut fastq

How to handle variable numbers of replicates in snakemake...

python snakemake fastq

awk; getting multiple lines from two files when they share a common header...

awk fastq

sort fastq file and keep sequences 15-17 bp in length...

bioinformatics fastq

How do I append variable name while splitting fastq file?...

linux shell awk fastq

How to sort dirty fastq files to interleaved fastq...

linux bash shell awk fastq