Access Python dictionary values by a shell variable within Snakemake shell commands...

Snakemake - Check if configfile has a value...

Snakemake: Rule is not picked up...

Snakemake - files as input/output with timestamp...

Is there any ways to use wildcards in output?...

Snakemake-Target rules may not contain wildcards. Please specify concrete files or a rule without wi...

Snakemake: pass command line arguments to scripts...

Snakemake expand a string saved in a variable...

Snakemake: how to implement function using wildcards?...

How to run Snakemake >= 8 on a Slurm cluster?...

different paths in Snakemake output...

Conda 4.10.3 and Snakemake >5 "__conda_exe" problem...

Snakemake remote rule stalling before executing script in PBS cluster...

How to prevent rule execution due to missing benchmark file in Snakemake?...

Zip input and output without wildcards, using absolute paths...

Awk return success code on exit to snakemake...

How to debug scripts for PyPSA-EUR?...

Using a function to set log file id with snakemake...

snakemake - specifying memory in resources directive vs. command-line call for individual rule...

Snakemake not re-running workflow or rule after script update...

Snakemake rerun triggers not causing dependent steps to be rerun...

Creating conda environment in snakemake rule...

Snakemake : How to tranverse DAG depth-first with aggregate rule at the end?...

How to run a rule with the working dir being the local storage prefix?...

Access Profile Information in Snakemake Rule...

Snakemake: adapt the pipeline to the new version 8.18.1 (example of combining checkpoint use inside ...

snakemake InputFunctionException in rule KeyError...

snakemake cluster script ImportError snakemake.utils...

snakemake: MissingOutputException in rule hifiasm in file /home/usr/path/to/Snakefile, line 13...

How to obtain syntax highlight/coloring for Snakemake file?...