Best practices for (bio)conda versions in Snakemake wrappers?...

How to log time duration (for each job and total) for a snakemake workflow?...

Manage the wrappers in Snakemake...

Snakemake running as an AWS Batch or an AWS Fargate task raises MissingInputException on the inputs ...

Multiple variables in input and output using wildcards snakemake...

How to enable "output" to detect variables in "run" in snakemake...

How to debug scripts for PyPSA-EUR?...

config file taking it as literal string snakemake...

Best practices for integrating optional arguments in shell command inside a snakemake pipeline...

Is there a way I can use snakemake to generate files based on sequence in a list?...

Setting resources dynamically on snakemake...

Define input files for snakemake using glob...

fastq-dump.3.1.1 err: item not found while constructing within virtual database module - the path &#...

Snakemake how to move files created to a new directory of same name...

expand based on a dictionary...

Snakemake rule does not recognize output from other rule...

Writing tests for input functions defined in `common.smk` (Snakemake)...

NameError: name 'snakemake' is not defined when running snakemake...

Running the same workflow many times with different configs without putting variables in the path...

How to set apptainer shell when using --software-deployment-method apptainer with Snakemake?...

How to run Snakemake on an undetermined set of samples?...

How to process spacific pairs of files with Snakemake?...

Snakemake (v8.10.7) fails to locate conda (or micromamba)...

Snakemake: Best practices in separating codebase from raw data and results?...

Snakemake issue: wildcard problems when trying to force a rule to be ran after another rule...

Submitted Snakemake Rules Start to Run and Fail Immediately without throwing any Error but Snakemake...

Snakemake taking the whole wildcard list as input...

What's the advantage to specifying a log in the log section of a snakemake rule rather than spec...

Relative Directories in snakefile using workflow.get_source()...

Snakemake: Handle paired reads in a directory...