Snakemake expand a string saved in a variable...

Snakemake: how to implement function using wildcards?...

How to run Snakemake >= 8 on a Slurm cluster?...

different paths in Snakemake output...

Conda 4.10.3 and Snakemake >5 "__conda_exe" problem...

Snakemake remote rule stalling before executing script in PBS cluster...

How to prevent rule execution due to missing benchmark file in Snakemake?...

Zip input and output without wildcards, using absolute paths...

Awk return success code on exit to snakemake...

How to debug scripts for PyPSA-EUR?...

Using a function to set log file id with snakemake...

snakemake - specifying memory in resources directive vs. command-line call for individual rule...

Snakemake not re-running workflow or rule after script update...

Snakemake rerun triggers not causing dependent steps to be rerun...

Creating conda environment in snakemake rule...

Snakemake : How to tranverse DAG depth-first with aggregate rule at the end?...

How to run a rule with the working dir being the local storage prefix?...

Access Profile Information in Snakemake Rule...

Snakemake: adapt the pipeline to the new version 8.18.1 (example of combining checkpoint use inside ...

snakemake InputFunctionException in rule KeyError...

snakemake cluster script ImportError snakemake.utils...

snakemake: MissingOutputException in rule hifiasm in file /home/usr/path/to/Snakefile, line 13...

How to obtain syntax highlight/coloring for Snakemake file?...

Snakemake: opening relative Github files in Snakemake modules OUTSIDE rules...

Snakemake Stripping Trailing Slash From Input...

What is the encoding of this SHA256 hash in the Snakemake documentation?...

Snakemake checkpoint is not evaluated...

Using Module in Snakemake. Define a rule after a use rule * from workflow throw an error...

If else for "temp" in snakemake...

Snakemake rule fails after doing only 1 job - Sortmerna...