Ignoring Sample Information when Making VCF with Freebayes...

Merging multiple files with two common columns, and replace the blank to 0...

base recalibrator --known-sites argument does not work...

Outputting two different gsub results to two columns with AWK...

Extracting vcf columns substring with awk...

How to get genotype data of SNVs from several new bam files?...

R: (Pegas) problems with haplotypes - (error: 'h' must be of class 'haplotype')...

How to find the base using the chromosome number and position?...

how its better to filtering a file by using awk with more than two pattern matching?...

Read table with comment lines starting with "##"...

Calculation the minor allele frequency from variant dosage matrix in R...

50MB file taking too long to read in python...

How to read vcf file in R...

faster way to replace values in R data.table...

Combine multiple VCF files into one large VCF file...

Dealing with clone...

plot overlap between two datasets using rsid value...

Optimal Solution for Integer Encoding VCF file...

select uniquely mapped genes to SNP...

How to run ensembl-vep in conda...

Split multiallelic to biallelic in vcf by plink 1.9 and its variant name...

AWK Loop Over Multiple Columns...

How to convert vcf file to ped file using plink?...

How to extract genotype information for each sample as a string from a VCF file using htslib?...

Extract a string from vcf file...

Files when unzipped are much larger (60x) than .gz...

Bash: text processing command...

Python to print a returned value can be either a list or a int...

awk to skip lines up to and including pattern...

append output of each iteration of a loop to the same in bash...