Snakemake expand zip some wildcards and expand full the other...

Run short python code directly on snakemake...

if element is in a list create a new list with named element + string with same elements in it...

How to pass a list or dictionary using Snakemake's command line config option...

Is it possible to see qsub job scripts and command line options etc. that will be issued by Snakemak...

Random "[Errno 13] Permission denied" during snakemake pipeline execution on cluster...

Snakemake : Failed to set marker file for job started ([WinError 3] The system cannot find the path ...

what is the snakemake variable name for slurm job id?...

Prevent snakemake from making output directory...

snakemake-workflows / rna-seq-star-deseq2: Could not create conda environment...

Can I define a default profile for snakemake?...

Snakemake/miniforge: Nothing provides libgcc-ng >=12 needed by freebayes-1.3.6-hbfe0e7f_2...

snakemake - do not delete output of failed rules...

Snakemake | Creating an aggregate without specifying a list in expand...

MissingOutputException snakemake...

How to use include directives with specific config files in snakemake?...

Snakemake: Only input files can be specified as functions...

Snakemake WorkflowError: Target rules may not contain wildcards...

Snakemake wildcards: Using wildcarded files from directory output...

Halt Snakemake rule while above rule finishes...

Snakemake pipeline not attempting to produce output?...

snakemake error: 'Wildcards' object has no attribute 'batch'...

Snakemake combine ambiguous rules...

R Draws Plots with Rectangles Instead of Text...

"scancel: error: Invalid job id Submitted batch job" with --cluster-cancel from snakemake...

Snakemake doesn't activate conda environment correctly...

'expand' won't do what I want. How do I generate a custom list of inputs to a rule in Sn...

Snakemake says list index is out of range even when sections of code are not accessed...

Parallel execution of a snakemake rule with same input and a range of values for a single parameter...

using lambda function to download files in snakemake: 'This IOFile is specified as a function an...