Snakemake changes wildcard, resulting in InputFunctionException...

Error submitting jobscript (exit code 127) when invoking snakemake through cron job on SLURM cluster...

Snakemake workflow in which wildcards produce different output files...

Logging Snakemake's own console output - how to change what file Snakemake logs to?...

How to run one part of a Snakemake pipeline without rerunning entire pipeline?...

Cannot use snakemake containerize flag when I'm using already existing named environments...

Snakemake use different wildcards in a rule...

snakemake threads wildcards not found...

split args of my script into multiple lines in snakemake...

Snakemake target rules may not contain wildcards...

Samtools shared library libcrypto.so.1.0.0 not found...

Snakemake wildcards from python wrapper not found...

Snakemake expand on a dictionary, keeping wildcards...

module 'asyncio' has no attribute 'coroutine' on snakemake...

Checkpoints, unknown files, intermediate processing - missing wildcards problem...

Snakemake - set final output filename from configuration...

Why does `snakemake --list-untracked ...` list the `config.yaml` file in its output?...

Generic input functions for Snakemake...

Running snakefile from directory that doesn't contain snakefile...

How to resolve wildcard error in Snakemake?...

Snakemake subtract a mask from two channels...

how to escape MissingOutputException while running a for loop in a rule in snakemake...

Empty pdf with for loop...

Bash code with if/else/fi and awk/perl regexps does work outside snakemake but not inside a snakemak...

What is the proper way to access values in nested dictionaries with Snakemake?...

Snakefile how to mix wildcards and variables...

Function or dict comprehension as a Snakefile output...

Target rules may not contain wildcards. Please specify concrete files or a rule without wildcards er...

How to make Snakemake wildcard work for empty string?...

Running multiple snakemake pipelines one after the other with one single script...