Symlink (auto-generated) directories via Snakemake...

How can I redirect R Markdown errors to a log file when running .Rmd scripts from a pipeline?...

How to access each element of a nested list for naming output in snakemake?...

Snakemake tutorial error: "AttributeError: 'str' object has no attribute 'name'...

Snakemake: specify cluster per rule...

Format number within a path name...

Why is no AmbiguousRuleException raised with these Snakemake rule and output combinations?...

Is it possible in snakemake to produce reports and the DAG images automatically?...

Snakemake: define output from list of filenames in text file...

Is there a way to introduce a temporary wildcard in Snakemake from a list?...

How to get Snakemake and CellRanger Count to work with multiple samples...

Using multiple wildcards in snakemake for differentiate replicates in a tsv file...

Does Snakemake have states during a workflow...

Input Functions in Snakemake...

Snakemake expand using dictionary values...

How to trace-back exact software version(s) used to generate result-files in a snakemake workflow...

Snakemake Salsa2 CreateCondaEnvironmentException with python 2.7. and openssl...

How can I have parallel Snakemake jobs fit in limited memory?...

Delete unwanted Snakemake Outputs...

Snakemake rule input and output is a directory...

Reserved name in Snakemake?...

What is the format for a Snakemake JSON config file?...

Use expand in python to create string with multiple paired variables (snakemake)...

Snakemake: Target rules may not contain wildcards...

Snakemake "Function did not return str or list of str."...

Can I run a try-except block (or similar) inside a Snakemake rule?...

SNAKEMAKE - Missing input files for rule all in snakemake because of wildcard_constraints...

Avoid shell printing output when running in params directive...

Wrong snakemake glob_wilcards and wildcard_constraints...

How to use wildcards in keyword wildcard_constraints...