snakemake wrapper: pointing wildcard to a list either config.yaml or txt...

Snakemake --use-conda with --cluster and NFS4 storage...

snakemake how to use glob_wilcards properly...

Snakemake Conda environment does not seem to be activating though it says it is...

Using cutadapt adapter file inputs in Snakemake...

"Select jobs to execute..." runs literally forever...

Snakemake: wildcards for parameter keys...

How do I write a snakemake input when not all jobs successfully output files from previous rule?...

MD task with `snakemake`...

Discard part of filename in Snakemake: "Wildcards in input files cannot be determined from outp...

snakemake error when running two jobs at once that use same conda environment...

Snakemake - Jupyter lab notebook does not find kernel...

Snakemake specifying configuration parameter from nested config.yaml file on the command line...

Snakemake: inserting sample name before every input file in one rule...

Modify snakefile to run multiple iterations of one workflow...

snakemake rule won't run the complete command...

Jobs allocate twice the cores that I request on SLURM...

String formatting of wildcards within output strings...

snakemake - Missing input files for rule all...

How are cores on SLURM allocated in relation to memory and thread allocation with Snakemake?...

Is there a way to assign individual Snakemake rules their own jobscripts?...

Snakemake run rule in order...

Snakemake: error when using split command?...

Snakemake copy one file to multiple files...

Snakemake: use checksums instead of timestamps?...

Snakemake: Difference between wildcard.wildcard_name and {wildcard}?...

Snakemake and sbatch...

How to handle ftp links provided in config file in snakemake?...

How to do a partial expand in Snakemake?...

conditional execution of snakemake rules based on column in metatable...