Enforcing wildcard constraints in expansion...

Running external scripts with wildcards in snakemake...

Snakemake: How do I get a shell command running with different arguments (integer) in a rule?...

Accessing the --default-remote-prefix within the Snakefile...

Snakemake multiple wildcards and argparse arguments...

Snakemake: trimmomatic wrapper attribute error...

How to write snakefile code that only runs in the first instance of possible multiple sub-instances...

Snakemake: output files in one output directory...

Snakemake: Docker image with all executables preinstalled...

STAR index issues to the step 4...

Snakemake create wildcards...

Snakemake rule for analysis where a single result file is produced for diff parameters, and paramete...

Snakemake: parameterized runs that re-use intermediate output files...

Meaning of the benchmark variables in snakemake...

snakemake wrapper: pointing wildcard to a list either config.yaml or txt...

Snakemake --use-conda with --cluster and NFS4 storage...

snakemake how to use glob_wilcards properly...

Snakemake Conda environment does not seem to be activating though it says it is...

Using cutadapt adapter file inputs in Snakemake...

"Select jobs to execute..." runs literally forever...

Snakemake: wildcards for parameter keys...

How do I write a snakemake input when not all jobs successfully output files from previous rule?...

MD task with `snakemake`...

Discard part of filename in Snakemake: "Wildcards in input files cannot be determined from outp...

snakemake error when running two jobs at once that use same conda environment...

Snakemake - Jupyter lab notebook does not find kernel...

Snakemake specifying configuration parameter from nested config.yaml file on the command line...

Snakemake: inserting sample name before every input file in one rule...

Modify snakefile to run multiple iterations of one workflow...

snakemake rule won't run the complete command...