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Access specific element of a list returned by a function in Snakemake...

Refer to input or output files of another Snakemake rule...

How to debug config variable in Snakefile...

Snakemake with R script, error: snakemake object not found...

Paths from json file don't expand in Snakemake...

snakemake - wildcards from python dictionary...

Run rule in Snakemake only if another rule fails, for the specific samples that it failed for?...

Snakemake input two variables and output one variable...

Iterate over 2 parameters in a Snakemake rule...

snakemake - Missing input files for rule salmon_quant: error...

snakemake - replacing command line parameters with wildcards by cluster profile...

snakemake - define input for aggregate rule without wildcards...

snakemake - accessing conda environment assets not in bin/...

Snakemake-create wildcards from output directory using checkpoints...

Add flag -I before multiple input in snakemake...

Enforcing wildcard constraints in expansion...

Running external scripts with wildcards in snakemake...

Snakemake: How do I get a shell command running with different arguments (integer) in a rule?...

Accessing the --default-remote-prefix within the Snakefile...

Snakemake multiple wildcards and argparse arguments...

Snakemake: trimmomatic wrapper attribute error...

How to write snakefile code that only runs in the first instance of possible multiple sub-instances...

Snakemake: output files in one output directory...

Snakemake: Docker image with all executables preinstalled...

STAR index issues to the step 4...

Snakemake create wildcards...

Snakemake rule for analysis where a single result file is produced for diff parameters, and paramete...

Snakemake: parameterized runs that re-use intermediate output files...

Meaning of the benchmark variables in snakemake...