Snakemake using a rule in a loop...

use snakemake pair-end bwa alignment...

problem with loop through a list in snakemake R script...

Is it possible to enable/disable certain Snakemake rules using command line flags...

How to fix this "IndexError: list index out of range" in snakemake...

Snakemake: How to save and access sample details in config.yml file?...

ambiguousruleexception in snakemake, parms crash of two branches...

How to define slurm output file name using wildcards for grouped rules...

snakemake: correct syntax for accessing dictionary values...

Is Snakemake run step by step or parallel?...

Specifying Python version within Snakemake using script parameter...

Snakemake report error:Missing input files for rulle all...

snakemake always report " MissingOutputException in line 44, Missing files after 5 seconds:...

always report errors: 'str' object is not callable in my snakemake for RNA-seq workflow...

snakemake: how to implement log directive when using run directive?...

Can snakemake create job error and output files automatically on a SLURM cluster?...

Snakemake cluster command with mem_mb resources in multiple cluster environments (LSF, SGE)...

snakemake: write files from an array...

Snakemake: Is it possible to only display "Job counts" using --dryrun?...

How to pass variable value as input in snakemake?...

How to include the current commit in a snakemake workflow for later reference?...

Snakemake and Pandas syntax: Getting sample specific parameters from the sample table...

Modifying R script to use command line arguments for use in Snakemake...

Snakemake : "wildcards in input files cannot be determined from output files"...

snakemake rules: Passing on variables outside of the file name...

Monitoring RAM and CPU consumtion of Snakemake...

Snakemake rule to write a new text file from input variables (Snakemake syntax)...

How to select all files from one sample?...

How to get pairs of brace expansions without getting all combinations?...

How to fix 'MissingOutputException'?...