Snakemake Getting Checkpoint and Aggregate Function to Work...

shell() function in run does not use singularity...

snakemake interpreting full path as relative path...

Snakemake InputFunctionException. AttributeError: 'Wildcards' object has no attribute...

Use special symbols in Snakemake parameter section...

submitting a snakemake job to the cluster from within a ('correct') conda environment...

Snakemake: 'Unexpected keyword notebook in rule definition' when trying to implement Jupyter...

Snakemake - Missing MissingInputException in line 20: Missing input files for rule stringt:...

Snakemake - delete all non-output files produced by a workflow...

snakemake - replacing wildcards in input directive by anonymous function...

passing dictionary of wildcard constraints from config file...

Use local directory for wrapper in Snakemake rule...

Snakemake SyntaxError: No rule keywords allowed after run/shell/script/wrapper/cwl in rule...

concatenation of ABRICATE csv results in snakemake file...

Combination of inputs in the snakemake shell script...

Cannot execute bash script in Snakemake...

Snakemake variable number of files...

Snakemake, any way to skip subdirectory with glob_wildcards...

Snakemake, how to change output filename when using wildcards...

snakemake use wildcard input/output in python function...

downloading fastq from snakemake...

Snakemake running Subworkflow but not the Rest of my workflow (goes directly to rule All)...

snakemake both shell I/O redirection and accessing snakemake variable using script...

Snakemake - Problem trying to use global_wildcards (TypeError: expected str, got list)...

Do snakemake-wrappers get fetched once and stored locally? Or fetched everytime from remote URL?...

'No values given for wildcard error' in snakemake...

Snakemake output with expand and different number of parameters...

Snakemake : SFTP on local machine...

Snakemake multiple input files with expand but no repetitions...

How to access wildcards within a run directive...