snakemake checkpoint and create a expand list/wildcards based on created output files...

Snakemake Error: No values given for wildcard...

Snakemake: create multiple wildcards for the same argument...

Merging two rules to one rule with wildcards/dictionary...

Snakemake : Can I access wildcards outside of rules?...

How can I continue a snakemake workflow from a subset of files created at some point in the workflow...

How to parallelize jobs for a list of files using snakemake (beginner question)...

why cant i do split with variable names in snakemake rule...

Snakemake installing R package in rule environment: error cannot move 00LOCK permission denied...

Snakemake: Use checkpoint and function to aggregate unknown number of files using wildcards...

Snakemake limit the memory usage of jobs...

Snakemake with 3 different programs, 2 input-directorys and one pre-defined .txt file with desired o...

Snakemake Checkpoints aggregate Skipping intermediate rules...

Snakemake: MissingInputException...

How do Snakemake checkpoints work when i do not wanna make a folder?...

Snakemake shadow rule when program writes to /tmp...

Using STAR shared memory module in Snakemake for sequential alignment tasks...

How to make Snakemake wrappers work with the {threads} variable...

Snakemake: Make rule wait for full excecution of previous rule...

snakemake: define parameter based on sample name or other input...

Snakemake rebuild/reschedule of jobs...

Snakemake report with Rmarkdown and custom.css file...

Conditional execution of one rule or another depending on the arguments given to a snakemake pipelin...

How to reference the output of a rule in snakemake...

snakemake only runs the first rule not all...

Snakemake: combine inputs over one wildcard...

Unspecified syntax error in Snakemake rule...

snakemake module from github changes targets?...

Snakemake optional output with expand()...

MissingRule Exception in Snakemake...