fastq Examples and Free Source Code

Using sed transliterate command in python...

python-3.x sed ascii fastq

Split Fasta file with parallel...

split parallel-processing fasta gnu-parallel fastq

awk: output with lines before and after a match...

unix awk fastq

grep issues when using two files - I've tried everything...

linux unix awk grep fastq

Writing a script for large text file manipulation (iterative substitution of duplicated lines), weir...

bash fastq

Trimming first characters of a line to match length of a second line...

text awk trim fastq

Run multiple lines at the same time bash...

bash fastq

find a DNA barcode with mismatches in sequence...

python awk sed dna-sequence fastq

looping through paired end fastq reads...

r dna-sequence fastq

eliminate empty files in a subroutine in perl...

perl bioinformatics fasta fastq sequencing

Bash script to concatenate text files with specific substrings in filenames...

bash fastq

Convert FASTQ ASCII to decimal and hexadecimal in R...

r ascii fastq

Convert multiples sequences from fastq to fasta in a folder...

perl bioinformatics fasta fastq

Unrecognized option: I picard.jar...

bioinformatics fastq picard

Why is FastQC not working after using Trim galore?...

unix bioinformatics fasta fastq

Regex search block with size equal to previous block...

regex fastq

How do combine a random amount of lists in python...

list python-3.x subtotal fastq

Grep outputting strange characters using -A and -B flags for fastq analysis...

bash fastq sequencing

Rqc file format not detected or supported r shiny...

r file-upload shiny fastq

BioPython: IOError: [Errno 2] No such file or directory...

python biopython fasta fastq

combine GNU parallel with nested for loops and multiple variables...

bash loops parallel-processing bioinformatics fastq

FastqGeneralIterator Output...

biopython fastq

I'm trying to compare two fastq file(paired reads),print line number n of another file...

awk pattern-matching fastq

adding an adapter sequence to the end of a fastq file...

linux awk sed fastq

Two variable in one for loop in bash...

bash shell loops for-loop fastq

Use awk to find regex of variable length and edit following lines based on length found...

linux bash shell awk fastq

Remove Rarely Occurring Lines From Sequencing Fastq File...

bash awk fastq

Processing FASTQ files based on mate pair length...

perl bioinformatics bioperl fastq sequencing

Unexpected awk parsing...

awk gawk fastq

Efficient way to TRANSLATE every Nth string in bash or R...

r bash awk fastq