fastq Examples and Free Source Code

In a fastq file, how do I change the sequence headers to the file name and a unique identifier?...

bash awk fastq

Combine multiple wildcards in Snakemake...

python snakemake fastq

Picard SamToFastq only extracts one read, then throws an error...

bioinformatics dna-sequence fastq picard bam

Search kmers of one file in kmers of an other file and count occurences in Python...

python biopython fastq

How can I solve a Java Not-class-found Exception?...

java python bioinformatics fastq

A question on spotting the error.What are the following errors in this python3 script?...

python-3.x bash fastq

bash: /bin/ls: Argument list too long...

list ls fastq

How to split paired-end fastq files?...

grep bioinformatics fastq samtools

Remove reads that have low quality base calls...

linux perl awk fastq

Write an txt file with fastq pair names with python...

python fastq

Some tips to improve a bash script for count fastq files...

bash shell fastq

Match specific pattern and print just the matched string in the previous line...

awk pattern-matching fastq

How can I write matching lines between two files as well as the line which follows a match...

python-3.x fastq

Save a string of text, if its proceeded by a different specific string of text?...

python python-3.x fastq

Read FASTQ file into a Spark dataframe...

scala apache-spark apache-spark-sql bioinformatics fastq

awk NR==FNR for command syntax...

bash awk fastq

Grep that tolerates mismatches to subset .fastq...

awk grep bioinformatics fastq sequencing

How to extract a specific text from gz file?...

linux awk sed grep fastq

grep every fourth line in .fastq...

grep fastq

Iterating over a gzipped text file stops after for loop...

python fastq

Merging files in folder with same file name except one character...

bash unix merge cat fastq

Renaming interleaved fastq headers with biopython...

python replace bioinformatics biopython fastq

read fastq file into dictionary...

python python-2.7 fastq

change "+" in fastq file. phred_offset error qiime...

fastq

Batch rename *fastq.gz files using regular expression...

regex linux perl rename fastq

Python 2.7 filecmp.cmp returns false even though the gzipped files are identical...

python gzip fastq cmp file-comparison

efficient splitting of fastq files by length...

awk fastq

in python loop print lines from alternating files...

python bioinformatics biopython fasta fastq

Python print lines after context...

python grep bioinformatics fasta fastq

reading large fastq file with python faster...

python multithreading multiprocessing fastq