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algorithmperlbioinformaticsbioperlclustal

Error in Bioperl program execution

I have installed bioperl but confused where to get it and where to run the bioperl program.Then I have tested for it and it was successful I have run a program for multiple seq. alignment.

Generated an error

Can't locate Bio/Tools/Run/Alignment/Clustalw.pm in @INC (@INC contains: /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at msa.pl line 3. BEGIN failed--compilation aborted at msa.pl line 3.

Solution

  • That means that the Bio::Tools::Run::Alignment::Clustalw module is missing. You need to install it. Use cpan Bio::Tools::Run::Alignment::Clustalw to install it.

    Also see: Installing perl dependency automatically in perl