fasta Examples and Free Source Code

extract sequences from multifasta file by ID in file using awk...

search awk bioinformatics multiline fasta

Count the number of lines and characters in a file separated by a specific character...

awk bioinformatics fasta

Read FASTA into a dataframe and extract subsequences of FASTA file...

r subset bioinformatics fasta

How to iterate a list created with SeqIO using re.findall, FASTA-input...

python regex biopython fasta python-3.12

Substitute pattern by an other pattern from two lists using while read line and sed...

awk sed while-loop fasta

Optimizing for loop for using dictionary values to format new fasta files...

python loops optimization fasta

Replacing fasta header without key-value pair file...

awk bioinformatics fasta

How to substitute a specific string pattern in a multi-line FASTA file using bash?...

bash awk sed bioinformatics fasta

How to linearize fasta sequences within a not only fasta file?...

awk fasta

Rename entries in fasta/fastq files in UNIX...

bash sed bioinformatics fasta

How should I go about implementing conditional string replacements in a fasta file?...

bash awk sed bioinformatics fasta

How to filter "productive" amino acid sequences...

python r sequence fasta

edit only the 1st column of a fasta header by removing strings after '-'...

awk sed fasta

Count reads in fasta file (loop)...

shell awk fasta

Errors in removing duplicate sequences fasta file - problem in the header...

python duplicates biopython fasta

How to download multiple sequences in one fasta file from UniProt using Python 3...

python python-requests append fasta

fasta file: replace header with filename...

bash sed fasta

Sequence length of FASTA file...

bash awk fasta

Convert table into fasta in R...

r fasta

Replacing numerical values in a FASTA file with their index in a different file. (Bash preferred)...

bash awk sed fasta character-replacement

Matching one dictionary key to another dictionary's value and returning a file with dict1.key an...

python dictionary for-loop sequence fasta

Change a fasta header with the next word after 'similar to'...

python bioinformatics fasta

Is there a way to fetch protein sequences from UniProt using Python?...

python google-colaboratory bioinformatics fasta

Adding file name to lines of characters starting with ">" for multiple .faa files with ...

powershell bioinformatics fasta

Converting FASTQ to FASTA with SED/AWK...

awk sed bioinformatics fasta fastq

Extract UNIQUE fasta sequences from a text file...

fasta

cannot import name 'ESMForMaskedLM' from 'transformers' on Google colab...

python bioinformatics huggingface-transformers fasta

Merge every last two lines in a 3-line row together...

bioinformatics fasta

How to extract the last contig in a multifasta file using awk...

awk fasta

Trim first and last bases in fasta file...

awk bioinformatics trim fasta dna-sequence