I'm trying to load a raster in a targets pipeline with the terra package.
The _targets.R file looks like this:
# Created by use_targets().
# Follow the comments below to fill in this target script.
# Then follow the manual to check and run the pipeline:
# https://books.ropensci.org/targets/walkthrough.html#inspect-the-pipeline # nolint
# Load packages required to define the pipeline:
library(targets)
# library(tarchetypes) # Load other packages as needed. # nolint
# Set target options:
tar_option_set(
packages = c(
"tidyverse",
"terra",
), # packages that your targets need to run
format = "rds" # default storage format
# Set other options as needed.
)
# tar_make_clustermq() configuration (okay to leave alone):
options(
clustermq.scheduler = "multiprocess"
)
# tar_make_future() configuration (okay to leave alone):
# Install packages {{future}}, {{future.callr}}, and {{future.batchtools}} to allow use_targets() to configure tar_make_future() options.
# Run the R scripts in the R/ folder with your custom functions:
tar_source()
# source("other_functions.R") # Source other scripts as needed. # nolint
# Replace the target list below with your own:
list(
## Load all data in R/load_data.R
tar_target(esg_rast_file, "data/ESGs/ESGs.tif", format="file"),
tar_target(esg_rast_data, terra::rast(esg_rast_file))
)
My output looks like this:
r$> library(targets)
r$> tar_make()
• start target esg_rast_file
• built target esg_rast_file [6.42 seconds]
• start target esg_rast_data
• built target esg_rast_data [0.05 seconds]
• end pipeline [7.96 seconds]
r$> tar_load(esg_rast_data)
NULL value passed as symbol address
r$> esg_rast_data
class : SpatRaster
Error in x@ptr$nrow() : external pointer is not valid
Is this what is supposed to happen? Am I doing something wrong? I can't seem to find anything online about these errors. I'm also having trouble loading sf .shp data as well. Seems like I am missing something.
You can use tar_terra_rast()
from the geotargets
package.
From the README:
library(targets)
tar_dir({ # tar_dir() runs code from a temporary directory.
tar_script({
library(geotargets)
get_elev <- function() {
terra::rast(system.file("ex", "elev.tif", package = "terra"))
}
list(
tar_terra_rast(
terra_rast_example,
get_elev()
)
)
})
tar_make()
x <- tar_read(terra_rast_example)
x
})
#> ▶ dispatched target terra_rast_example
#> ● completed target terra_rast_example [0.011 seconds, 7.992 kilobytes]
#> ▶ ended pipeline [0.085 seconds]
#> class : SpatRaster
#> dimensions : 90, 95, 1 (nrow, ncol, nlyr)
#> resolution : 0.008333333, 0.008333333 (x, y)
#> extent : 5.741667, 6.533333, 49.44167, 50.19167 (xmin, xmax, ymin, ymax)
#> coord. ref. : lon/lat WGS 84 (EPSG:4326)
#> source : terra_rast_example
#> name : elevation
#> min value : 141
#> max value : 547