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rpackageruntime-errorupdates

I need to update a package


I want to install the package sp, but then R shows me this message:

> install.packages("sp")

Error in install.packages : Updating loaded packages


Solution

  • Have you tried restarting your R session? It works fine in my RStudio.

    If you have issues installing the package from the CRAN Repository, try this:

    devtools::install_github("edzer/sp")
    

    It will return these outputs

    Downloading GitHub repo edzer/sp@HEAD
    √  checking for file 'C:\Users\Users\AppData\Local\Temp\RtmpSOAQPV\remotes242444575da6\edzer-sp-2ace7ca/DESCRIPTION' (952ms)
    -  preparing 'sp': (8.6s)
    √  checking DESCRIPTION meta-information ... 
    -  cleaning src
    -  checking for LF line-endings in source and make files and shell scripts (2s)
    -  checking for empty or unneeded directories
    -  looking to see if a 'data/datalist' file should be added
    -  building 'sp_1.4-5.tar.gz'
       
    Installing package into ‘C:/Users/Users/Documents/R/win-library/4.1’
    (as ‘lib’ is unspecified)
    * installing *source* package 'sp' ...
    ** using staged installation
    ** libs
    
    *** arch - i386
    /mingw32/bin/gcc  -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG          -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c Rcentroid.c -o Rcentroid.o
    /mingw32/bin/gcc  -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG          -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c gcdist.c -o gcdist.o
    /mingw32/bin/gcc  -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG          -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
    /mingw32/bin/gcc  -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG          -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c pip.c -o pip.o
    /mingw32/bin/gcc  -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG          -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c pip2.c -o pip2.o
    /mingw32/bin/gcc  -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG          -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c sp_xports.c -o sp_xports.o
    /mingw32/bin/gcc  -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG          -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c surfaceArea.c -o surfaceArea.o
    /mingw32/bin/gcc  -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG          -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c zerodist.c -o zerodist.o
    /mingw32/bin/gcc -shared -s -static-libgcc -o sp.dll tmp.def Rcentroid.o gcdist.o init.o pip.o pip2.o sp_xports.o surfaceArea.o zerodist.o -LC:/PROGRA~1/R/R-41~1.0/bin/i386 -lR
    installing to C:/Users/Documents/R/win-library/4.1/00LOCK-sp/00new/sp/libs/i386
    
    *** arch - x64
    /mingw64/bin/gcc  -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG          -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c Rcentroid.c -o Rcentroid.o
    /mingw64/bin/gcc  -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG          -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c gcdist.c -o gcdist.o
    /mingw64/bin/gcc  -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG          -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
    /mingw64/bin/gcc  -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG          -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c pip.c -o pip.o
    /mingw64/bin/gcc  -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG          -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c pip2.c -o pip2.o
    /mingw64/bin/gcc  -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG          -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c sp_xports.c -o sp_xports.o
    /mingw64/bin/gcc  -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG          -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c surfaceArea.c -o surfaceArea.o
    /mingw64/bin/gcc  -I"C:/PROGRA~1/R/R-41~1.0/include" -DNDEBUG          -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c zerodist.c -o zerodist.o
    /mingw64/bin/gcc -shared -s -static-libgcc -o sp.dll tmp.def Rcentroid.o gcdist.o init.o pip.o pip2.o sp_xports.o surfaceArea.o zerodist.o -LC:/PROGRA~1/R/R-41~1.0/bin/x64 -lR
    installing to C:/Users/Documents/R/win-library/4.1/00LOCK-sp/00new/sp/libs/x64
    ** R
    ** data
    ** demo
    ** inst
    ** byte-compile and prepare package for lazy loading
    ** help
    *** installing help indices
      converting help for package 'sp'
        finding HTML links ... done
        00sp                                    html  
        CRS-class                               html  
        DMS-class                               html  
        GridTopology-class                      html  
        Line-class                              html  
        Line                                    html  
        Lines-class                             html  
        Polygon-class                           html  
        Polygons-class                          html  
        Rlogo                                   html  
        Spatial-class                           html  
    REDIRECT:topic   coordinates<-,Spatial-method -> Spatial-class.html [ FAIL ]
    REDIRECT:topic   [[<-,Spatial,ANY,missing-method -> Spatial-class.html [ FAIL ]
    REDIRECT:topic   [<-,Spatial-method -> Spatial-class.html [ FAIL ]
    REDIRECT:topic   $<-,Spatial-method -> Spatial-class.html [ FAIL ]
        SpatialGrid-class                       html  
        SpatialGrid                             html  
        SpatialGridDataFrame-class              html  
        SpatialGridDataFrame                    html  
        SpatialLines-class                      html  
        SpatialLines                            html  
        SpatialLinesDataFrame-class             html  
        SpatialMultiPoints-class                html  
    REDIRECT:topic   $<-,SpatialMultiPoints,character-method -> SpatialMultiPoints-class.html [ FAIL ]
        SpatialMultiPoints                      html  
        SpatialMultiPointsDataFrame-class       html  
        SpatialPixels-class                     html  
        SpatialPixelsDataFrame-class            html  
        SpatialPoints-class                     html  
    REDIRECT:topic   $<-,SpatialPoints,character-method -> SpatialPoints-class.html [ FAIL ]
        SpatialPoints                           html  
        SpatialPointsDataFrame-class            html  
        SpatialPolygons-class                   html  
        SpatialPolygons                         html  
        SpatialPolygonsDataFrame-class          html  
        addattr                                 html  
        aggregate                               html  
        as.SpatialPolygons.GridTopology         html  
        as.SpatialPolygons.PolygonsList         html  
        asciigrid                               html  
        bbox                                    html  
        bpy.colors                              html  
        bubble                                  html  
        char2dms                                html  
        compassRose                             html  
        coordinates-methods                     html  
    REDIRECT:topic   coordinates<-,data.frame-method -> coordinates-methods.html [ FAIL ]
        coordinates                             html  
    REDIRECT:topic   coordinates<- -> coordinates.html [ FAIL ]
        coordnames-methods                      html  
    REDIRECT:topic   coordnames<- -> coordnames-methods.html [ FAIL ]
    REDIRECT:topic   coordnames<-,SpatialPoints,character-method -> coordnames-methods.html [ FAIL ]
    REDIRECT:topic   coordnames<-,SpatialMultiPoints,character-method -> coordnames-methods.html [ FAIL ]
    REDIRECT:topic   coordnames<-,SpatialLines,character-method -> coordnames-methods.html [ FAIL ]
    REDIRECT:topic   coordnames<-,Lines,character-method -> coordnames-methods.html [ FAIL ]
    REDIRECT:topic   coordnames<-,Line,character-method -> coordnames-methods.html [ FAIL ]
    REDIRECT:topic   coordnames<-,SpatialPolygons,character-method -> coordnames-methods.html [ FAIL ]
    REDIRECT:topic   coordnames<-,GridTopology,character-method -> coordnames-methods.html [ FAIL ]
    REDIRECT:topic   coordnames<-,SpatialGrid,character-method -> coordnames-methods.html [ FAIL ]
    REDIRECT:topic   coordnames<-,SpatialPixels,character-method -> coordnames-methods.html [ FAIL ]
        degaxis                                 html  
        dimensions                              html  
        disaggregate                            html  
        flip                                    html  
        geometry-methods                        html  
    REDIRECT:topic   geometry<- -> geometry-methods.html [ FAIL ]
    REDIRECT:topic   geometry<-,data.frame,Spatial-method -> geometry-methods.html [ FAIL ]
        gridded-methods                         html  
    REDIRECT:topic   fullgrid<- -> gridded-methods.html [ FAIL ]
    REDIRECT:topic   gridded<- -> gridded-methods.html [ FAIL ]
    REDIRECT:topic   fullgrid<-,Spatial,ANY-method -> gridded-methods.html [ FAIL ]
    REDIRECT:topic   fullgrid<-,SpatialGrid,logical-method -> gridded-methods.html [ FAIL ]
    REDIRECT:topic   fullgrid<-,SpatialGridDataFrame,logical-method -> gridded-methods.html [ FAIL ]
    REDIRECT:topic   fullgrid<-,SpatialPixels,logical-method -> gridded-methods.html [ FAIL ]
    REDIRECT:topic   fullgrid<-,SpatialPixelsDataFrame,logical-method -> gridded-methods.html [ FAIL ]
    REDIRECT:topic   gridded<-,SpatialGrid,logical-method -> gridded-methods.html [ FAIL ]
    REDIRECT:topic   gridded<-,SpatialGridDataFrame,logical-method -> gridded-methods.html [ FAIL ]
    REDIRECT:topic   gridded<-,SpatialPixels,logical-method -> gridded-methods.html [ FAIL ]
    REDIRECT:topic   gridded<-,SpatialPixelsDataFrame,logical-method -> gridded-methods.html [ FAIL ]
    REDIRECT:topic   gridded<-,SpatialPoints,list-method -> gridded-methods.html [ FAIL ]
    REDIRECT:topic   gridded<-,SpatialPoints,logical-method -> gridded-methods.html [ FAIL ]
    REDIRECT:topic   gridded<-,SpatialPointsDataFrame,list-method -> gridded-methods.html [ FAIL ]
    REDIRECT:topic   gridded<-,SpatialPointsDataFrame,logical-method -> gridded-methods.html [ FAIL ]
    REDIRECT:topic   gridded<-,data.frame,GridTopology-method -> gridded-methods.html [ FAIL ]
    REDIRECT:topic   gridded<-,data.frame,character-method -> gridded-methods.html [ FAIL ]
    REDIRECT:topic   gridded<-,data.frame,formula-method -> gridded-methods.html [ FAIL ]
        gridindex2nb                            html  
        gridlines                               html  
        image                                   html  
        is.projected                            html  
    REDIRECT:topic   proj4string<- -> is.projected.html [ FAIL ]
    REDIRECT:topic   proj4string<-,Spatial,CRS-method -> is.projected.html [ FAIL ]
    REDIRECT:topic   proj4string<-,Spatial,character-method -> is.projected.html [ FAIL ]
        loadmeuse                               html  
        mapasp                                  html  
        merge                                   html  
        meuse                                   html  
        meuse.grid                              html  
        meuse.grid_ll                           html  
        meuse.riv                               html  
        over                                    html  
        panel                                   html  
        point.in.polygon                        html  
        polygons-methods                        html  
    REDIRECT:topic   polygons<-,data.frame,SpatialPolygons-method -> polygons-methods.html [ FAIL ]
        polygons                                html  
    REDIRECT:topic   polygons<- -> polygons.html [ FAIL ]
    REDIRECT:topic   Previous alias or file overwritten by alias: C:/Users/Documents/R/win-library/4.1/00LOCK-sp/00new/sp/help/polygons.html
        recenter-methods                        html  
        select.spatial                          html  
        sp-deprecated                           html  
        spChFIDs-methods                        html  
    REDIRECT:topic   spChFIDs<- -> spChFIDs-methods.html [ FAIL ]
    REDIRECT:topic   spChFIDs<-,Spatial-method -> spChFIDs-methods.html [ FAIL ]
        spDistsN1                               html  
        spTransform                             html  
        spplot                                  html  
        spsample                                html  
        stack                                   html  
        surfaceArea                             html  
        zerodist                                html  
    ** building package indices
    ** installing vignettes
    ** testing if installed package can be loaded from temporary location
    *** arch - i386
    *** arch - x64
    ** testing if installed package can be loaded from final location
    *** arch - i386
    *** arch - x64
    ** testing if installed package keeps a record of temporary installation path
    * DONE (sp)
    

    After the install finishes, load the package by

    library(sp)
    

    Otherwise, if it still return errors. Try downloading the package from here and install them to RStudio manually