Copy Maven dependency files and runtime in jpackage

I have a JavaFX project with dependencies on SQLite and POI, so I used maven-dependency-plugin to copy all dependencies in target\lib folder. That folder contains about 21 dependencies common-codecs, curvesapi, javafx-base, javafx-fxml... etc.

To create a jpackage I'm using jpackage-maven-plugin to create an installer. I have jmods folder copied to java.home. The POM is as follows:

    <dependencies>
        <dependency>
            <groupId>org.openjfx</groupId>
            <artifactId>javafx-controls</artifactId>
            <version>19</version>
        </dependency>
        <dependency>
            <groupId>org.openjfx</groupId>
            <artifactId>javafx-fxml</artifactId>
            <version>19</version>
        </dependency>
        <dependency>
            <groupId>org.xerial</groupId>
            <artifactId>sqlite-jdbc</artifactId>
            <version>3.39.3.0</version>
        </dependency>
        <dependency>
            <groupId>org.apache.poi</groupId>
            <artifactId>poi-ooxml</artifactId>
            <version>5.2.3</version>
        </dependency>
        <dependency>
            <groupId>org.apache.poi</groupId>
            <artifactId>poi</artifactId>
            <version>5.2.3</version>
        </dependency>
    </dependencies>
    <build>
        <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-dependency-plugin</artifactId>
                <version>3.4.0</version>
                <executions>
                    <execution>
                        <id>copy-dependencies</id>
                        <phase>prepare-package</phase>
                        <goals>
                            <goal>copy-dependencies</goal>
                        </goals>
                        <configuration>
                            <outputDirectory>${project.build.directory}/lib/</outputDirectory>
                            <overWriteReleases>false</overWriteReleases>
                            <overWriteSnapshots>false</overWriteSnapshots>
                            <overWriteIfNewer>true</overWriteIfNewer>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.openjfx</groupId>
                <artifactId>javafx-maven-plugin</artifactId>
                <version>0.0.8</version>
                <configuration>
                    <launcher>App</launcher>
                    <mainClass>com.example.App</mainClass>
                </configuration>
                <executions>
                    <execution>
                        <id>default-cli</id>
                        <configuration>
                            <mainClass>com.example.App</mainClass>
                        </configuration>
                    </execution>
                    <execution>
                        <id>debug</id>
                        <configuration>
                            <options>
                                <option>-agentlib:jdwp=transport=dt_socket,server=y,suspend=y,address=localhost:8000</option>
                            </options>
                        </configuration>
                    </execution>
                    <execution>
                        <id>ide-debug</id>
                        <configuration>
                            <options>
                                <option>-agentlib:jdwp=transport=dt_socket,server=n,address=${jpda.address}</option>
                            </options>
                        </configuration>
                    </execution>
                    <execution>
                        <id>ide-profile</id>
                        <configuration>
                            <options>
                <option>${profiler.jvmargs.arg1}</option>
                <option>${profiler.jvmargs.arg2}</option>
                <option>${profiler.jvmargs.arg3}</option>
                <option>${profiler.jvmargs.arg4}</option>
                <option>${profiler.jvmargs.arg5}</option>
                            </options>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.panteleyev</groupId>
                <artifactId>jpackage-maven-plugin</artifactId>
                <version>1.6.0</version>
                <configuration>
                    <name>ExampleFX</name>
                    <appVersion>${project.version}</appVersion>
                    <icon>${basedir}/icon.ico</icon>
                    <vendor>Myself</vendor>
                    <destination>Runtime</destination>
                    <modulePaths>
                        <modulePath>C:\Program Files\Java\jmods</modulePath>
                        <modulePath>${project.build.directory}/classes</modulePath>
                    </modulePaths>
                    <module>com.example/com.example.App</module>
                    <runtimeImage>${java.home}/lib</runtimeImage>
                    <winDirChooser>true</winDirChooser>
                    <winShortcut>true</winShortcut>
                    <winConsole>true</winConsole>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>3.10.1</version>
                <configuration>
                    <release>19</release>
                </configuration>
            </plugin>
        </plugins>
    </build>
</project>

This command neither packages the lib folder in the installer, nor does it properly copies JVM, as on running the program, it gives Failed to find JVM in "C:\Program Files\Example\runtime" directory. error. Any help appreciated.

EDIT

Changed some parameters:

from<runtimeImage>${java.home}/lib</runtimeImage> to <runtimeImage>${java.home}</runtimeImage>,

added module path <modulePath>${project.build.directory}/lib</modulePath>

Now the app fails to find modules (dependencies) which are present in ${INSTALLDIR}/app/mods. Trying to add these modules require I remove runtimeImage parameter. If I do so:

<addModules>javafx.fxml,javafx.controls,
org.apache.poi.ooxml,org.apache.poi.poi,org.xerial.sqlitejdbc,SparseBitSet,
org.apache.commons.compress,org.apache.commons.codec,org.apache.commons.collections4,
org.apache.commons.io,com.github.virtuald.curvesapi,commons.math3,
org.apache.commons.collections4,org.apache.xmlbeans</addModules>

I always get error regarding any module randomly: jlink failed with: Error: automatic module cannot be used with jlink: commons.math3 from file:///C:/Users/MY/Documents/NetBeansProjects/Example/target/lib/commons-math3-3.6.1.jar

module-info

module com.example{
    requires javafx.controls;
    requires javafx.fxml;
    requires javafx.base;
    requires javafx.graphics;
    requires java.logging;
    requires java.base;
    requires java.sql;
    requires org.apache.poi.poi;
    requires org.apache.poi.ooxml;
    requires org.apache.commons.codec;
    requires org.apache.commons.collections4;
    requires org.apache.commons.compress;
    requires org.apache.commons.io;
    requires commons.math3;
    requires com.github.virtuald.curvesapi;
    requires org.apache.logging.log4j;
    requires SparseBitSet;
    requires org.xerial.sqlitejdbc;
    requires org.apache.xmlbeans;
    
    opens com.example to javafx.fxml;
    exports com.example;
}

Solution

Use JPackageScriptFX. Here's how to use it:

(I'll refer to JPackageScriptFX as JPS and your project as Example)

Copy your Example project folder inside JPS's folder.
Open JPS's POM, and go to <modules> section. Remove all existing module entries (jpackagefx-main,jpackagefx-module1,jpackagefx-module2). Write <module>Example</module> instead.
Change groupId to Example's groupId.artifactId.
Open Example's POM. Write <packaging>jar</packaging> beneath <version> tag.
Copy jpackagefx-main's maven-dependency-plugin from its POM and copy it to Example's POM.
Write <configuration><mainClass>com.example.App</mainClass></configuration> in javafx-maven-plugin if it isn't there already.
Copy whole of the <profiles> section from jpackagefx-main and copy it to Example's POM.
Rename ${client.version} to ${project.version} in <APP_VERSION> and <PROJECT_VERSION> (This is required especially in the case of Linux, otherwise the jpackage will fail in final stages (dpkg-deb returns with error code 2)).
Create a new class file named AppLauncher, and write following code in it:

package com.example
public class AppLauncher{
    public static void main(String[] args){
        App.main(args);
    }
}

Depending on your platform (Windows, Linux, Mac) copy the build_app_linux.sh, build_app_mac.sh or build_app_windows.bat file inside Example's project folder. I'll refer to the linux version in the next steps, you can find appropriate lines in other platform files.
Line 13, Change MAIN_JAR="main-ui-... to MAIN_JAR="Example-... or whatever the name of your Jar file is (You can find Jar filename by building the project and simply looking its name in target folder).
Line 47, change class path to target/classes/com/Example/App.class
Line 63, append modules you want in your project (in your case, ,java.sql).
Line 92, Change to whatever name you want to give. You can also use quotes " to give space in the name.
Line 93, set --main-class to com.example.AppLauncher.
Line 97, optinally, set your own icon by modifying this line.
For Windows, additionally change line 40 to --print-module-deps target\classes\com\example\App.class > temp.txt.
Open pom.xml[parent] using Whatever IDE. I'm using netbeans, so I can clean and build the project by pressing SHIFT+F11.
If there's no error, then your installer will be present in target\installer