I'm running snakemake -n -c1 --dag | dot -Tsvg > dag.svg
to get the DAG file.
I was wondering if I could somehow set the color scheme for every node. For example, in the picture below, rule samtools_fixmate
is of different color from samtools_sort
and of samtools_markduplicates
. Can you somehow specify within snakemake file what color the nodes should be?
I'll settle even for out-of-snakefile solutions.
Similar to this answer, you can export the dag into a dot file:
snakemake --dag > test.dot
The dot file can then be edited as necessary.