I am trying to clean up some data frames to a more useful format, I am running R studio 1.3.1093 and R 3.5.3.
My data frame looks like this:
Peptide | 5C_T6m | 5C_T12m |
---|---|---|
PEP | 0.5 | 1.1 |
TIDE | 0.6 | 1.2 |
and I am trying to convert it to:
Peptide | Temp | Timepoint | abundance |
---|---|---|---|
PEP | 5 | 6 | 0.5 |
TIDE | 5 | 6 | 0.6 |
PEP | 5 | 12 | 1.1 |
TIDE | 5 | 12 | 1.2 |
I can't visualize in my head how it is possible to move between the two. in a stepwise approach.
Im new to R, and have done some bits of data reshaping using TidyVerse, but this seems to me like it requires multiple steps to get there, and its is hard for me to visualise the individual steps.
Any help with either just the steps i would need to take or some code suggestions would be great.
Thanks!
The function pivot_longer
is very useful in this kind of cases
df %>% pivot_longer(cols=!Peptide,
names_to = c("Temp", "Timepoint"),
names_pattern = "(.*)C_T(.*)m",
values_to = "abundance")