I'm a relatively new C programmer, and I've noticed that many conventions from other higher-level OOP languages don't exactly hold true on C.
Is it okay to use short functions to have your coding stay organized (even though it will likely be called only once)? An example of this would be 10-15 lines in something like void init_file(void), then calling it first in main().
I would have to say, not only is it OK, but it's generally encouraged. Just don't overly fragment the train of thought by creating myriads of tiny functions. Try to ensure that each function performs a single cohesive, well... function, with a clean interface (too many parameters can be a hint that the function is performing work which is not sufficiently separate from it's caller).
Furthermore, well-named functions can serve to replace comments that would otherwise be needed. As well as providing re-use, functions can also (or instead) provide a means to organize the code and break it down into smaller units which can be more readily understood. Using functions in this way is very much like creating packages and classes/modules, though at a more fine-grained level.