Why do I got junk data, when sending a structure to shader storage buffer?

Question

I am working on an opengl based raytracer application in c++. I would like to send data from the cpu side to the fragment shader. The data is a bounding volume hierarchies (BVH) tree. Unfortunately on the shader side I got junk data, when I am trying to write out the coordinates as color with gl_fragcolor. I don't know why. Any help is appreciated.

I have this structure on CPU side:

struct FlatBvhNode {

        glm::vec4 min;   
        glm::vec4 max;
        int order;
        bool isLeaf;
        bool createdEmpty;
        vector<glm::vec4> indices;

        FlatBvhNode() { }

        FlatBvhNode(glm::vec3 min, glm::vec3 max, int ind, bool isLeaf, bool createdEmpty, vector<glm::vec3> indices) {
            this->min=glm::vec4(min.x, min.y, min.z, 1.0f);
            this->max=glm::vec4(max.x, max.y, max.z, 1.0f);
            this->order=ind;
            this->isLeaf=isLeaf;
            this->createdEmpty=createdEmpty;

            indices.reserve(2);
            for (int i = 0; i < indices.size(); i++) {
                this->indices.push_back(glm::vec4(indices.at(i).x, indices.at(i).y, indices.at(i).z, 1));
            }
        }
    };

I would like to receive the above structure in the fragment shader as:

struct FlatBvhNode{     //base aligment     aligned offset
    vec3 min;           // 16 byte          0
    vec3 max;           // 16 byte          16
    int order;          // 4 byte           20
    bool isLeaf;        // 4 byte           24
    bool createdEmpty;  // 4 byte           28
    vec3 indices[2];    // 32 byte          32
};

I am not sure that the aligned offsets are right. I have read that vec3s are treated as 16 bytes , booleans and integers as 4 bytes. Secondly the aligned offset has to be equal or multiple of the base aligment.

I am sending the above structure with these code:

    vector<BvhNode::FlatBvhNode>* nodeArrays=bvhNode.putNodeIntoArray();
    unsigned int nodesArraytoSendtoShader;
    glGenBuffers(1, &nodesArraytoSendtoShader);
    glBindBuffer(GL_SHADER_STORAGE_BUFFER, nodesArraytoSendtoShader);

    glBufferData(GL_SHADER_STORAGE_BUFFER, nodeArrays->size() * sizeof(BvhNode::FlatBvhNode),  nodeArrays, GL_STATIC_DRAW);
    glBindBufferRange(GL_SHADER_STORAGE_BUFFER, 2, nodesArraytoSendtoShader, 0, nodeArrays->size() * sizeof(BvhNode::FlatBvhNode));
    glBindBuffer(GL_SHADER_STORAGE_BUFFER, 0);

Answer 1

When you specify the Shader Storage Buffer Object, then you have to use the std430 qualifier.
See OpenGL 4.6 API Core Profile Specification; 7.6.2.2 Standard Uniform Block Layout.

If you want to use the following data structure in the shader:

struct FlatBvhNode
{     
                        // base aligment    aligned offset
    vec4 min;           // 16 byte          0
    vec4 max;           // 16 byte          16
    int  order;         // 4 byte           32
    int  isLeaf;        // 4 byte           36
    int  createdEmpty;  // 4 byte           40
    vec4 indices[2];    // 32 byte          48
};

layout(std430) buffer TNodes
{
    FlatBvhNode nodes[];
}

then you have to consider, that indices is an array of type vec4. Hence indices is aligned to 16 bytes.

This corresponds to the following data structure in c ++

struct FlatBvhNode {

        glm::vec4 min;   
        glm::vec4 max;
        int order;
        int isLeaf;
        int createdEmpty;
        int dummy; // alignment
        std::array<glm::vec4, 2> indices;
}

Note, while std::vector encapsulates dynamic size arrays, std::array encapsulates fixed size arrays. std::array<glm::vec4, 2> corresponds to glm::vec4[2], but std::vector<glm::vec4> is more like glm::vec4* and some additional size information.