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rapache-sparkamazon-s3rstudiosparklyr

How to read all files in S3 folder/bucket using sparklyr in R?


I have tried below code & its combinations in order to read all files given in a S3 folder , but nothing seems to be working .. Sensitive information/code is removed from the below script. There are 6 files each with 6.5 GB .

#Spark Connection
sc<-spark_connect(master = "local" , config=config)


rd_1<-spark_read_csv(sc,name = "Retail_1",path = "s3a://mybucket/xyzabc/Retail_Industry/*/*",header = F,delimiter = "|")


# This is the S3 bucket/folder for files [One of the file names Industry_Raw_Data_000]
s3://mybucket/xyzabc/Retail_Industry/Industry_Raw_Data_000

This the error I get

Error: org.apache.spark.sql.AnalysisException: Path does not exist: s3a://mybucket/xyzabc/Retail_Industry/*/*;
at org.apache.spark.sql.execution.datasources.DataSource$.org$apache$spark$sql$execution$datasources$DataSource$$checkAndGlobPathIfNecessary(DataSource.scala:710)

Solution

  • After spending few weeks on googling that issue , it is solved . Here ,the solution..

    Sys.setenv(AWS_ACCESS_KEY_ID="abc") 
    Sys.setenv(AWS_SECRET_ACCESS_KEY="xyz")
    
    config<-spark_config()
    
    config$sparklyr.defaultPackages <- c(
    "com.databricks:spark-csv_2.10:1.5.0",
    "com.amazonaws:aws-java-sdk-pom:1.10.34",
    "org.apache.hadoop:hadoop-aws:2.7.3")
    
    
    
    #Spark Connection
    sc<-spark_connect(master = "local" , config=config)
    
    # hadoop configurations
    ctx <- spark_context(sc)
    jsc <- invoke_static( sc,
    "org.apache.spark.api.java.JavaSparkContext",
    "fromSparkContext",
    ctx
    )
    
    hconf <- jsc %>% invoke("hadoopConfiguration")  
    hconf %>% invoke("set", "com.amazonaws.services.s3a.enableV4", "true")
    hconf %>% invoke("set", "fs.s3a.fast.upload", "true")
    
    folder_files<-"s3a://mybucket/abc/xyz"
    
    rd_11<-spark_read_csv(sc,name = "Retail",path=folder_files,infer_schema = TRUE,header = F,delimiter = "|")
    
    
    spark_disconnect(sc)