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apache-sparkcassandradatabricksdatastax-enterprisecassandra-3.0

How to solve this error org.apache.spark.sql.catalyst.errors.package$TreeNodeException

I have two procesess each process do 1) connect oracle db read a specific table 2) form dataframe and process it. 3) save the df to cassandra.

If I am running both process parallelly , both try to read from oracle and I am getting below error while second process read the data

 ERROR ValsProcessor2: org.apache.spark.sql.catalyst.errors.package$TreeNodeException: execute, tree:
Exchange SinglePartition
+- *(1) HashAggregate(keys=[], functions=[partial_count(1)], output=[count#290L])
   +- *(1) Scan JDBCRelation((SELECT * FROM BM_VALS WHERE ROWNUM <= 10) T) [numPartitions=2] [] PushedFilters: [], ReadSchema: struct<>
at org.apache.spark.sql.catalyst.errors.package$.attachTree(package.scala:56)
at org.apache.spark.sql.execution.exchange.ShuffleExchangeExec.doExecute(ShuffleExchangeExec.scala:119)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:131)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:127)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$executeQuery$1.apply(SparkPlan.scala:155)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:152)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:127)
at org.apache.spark.sql.execution.InputAdapter.inputRDDs(WholeStageCodegenExec.scala:371)
at org.apache.spark.sql.execution.aggregate.HashAggregateExec.inputRDDs(HashAggregateExec.scala:150)
at org.apache.spark.sql.execution.WholeStageCodegenExec.doExecute(WholeStageCodegenExec.scala:605)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:131)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$1.apply(SparkPlan.scala:127)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$executeQuery$1.apply(SparkPlan.scala:155)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:152)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:127)
at org.apache.spark.sql.execution.SparkPlan.getByteArrayRdd(SparkPlan.scala:247)
at org.apache.spark.sql.execution.SparkPlan.executeCollect(SparkPlan.scala:294)
at org.apache.spark.sql.Dataset$$anonfun$count$1.apply(Dataset.scala:2770)
at org.apache.spark.sql.Dataset$$anonfun$count$1.apply(Dataset.scala:2769)
at org.apache.spark.sql.Dataset$$anonfun$52.apply(Dataset.scala:3254)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(SQLExecution.scala:77)
at org.apache.spark.sql.Dataset.withAction(Dataset.scala:3253)
at org.apache.spark.sql.Dataset.count(Dataset.scala:2769)
at com.snp.processors.BenchmarkModelValsProcessor2.process(BenchmarkModelValsProcessor2.scala:43)
at com.snp.utils.Utils$$anonfun$getAllDefinedProcessors$2.apply(Utils.scala:28)
at com.snp.utils.Utils$$anonfun$getAllDefinedProcessors$2.apply(Utils.scala:28)
at com.sp.MigrationDriver$$anonfun$main$2$$anonfun$apply$1.apply(MigrationDriver.scala:78)
at com.sp.MigrationDriver$$anonfun$main$2$$anonfun$apply$1.apply(MigrationDriver.scala:78)
at scala.Option.map(Option.scala:146)
at com.sp.MigrationDriver$$anonfun$main$2.apply(MigrationDriver.scala:75)
at com.sp.MigrationDriver$$anonfun$main$2.apply(MigrationDriver.scala:74)
at scala.collection.Iterator$class.foreach(Iterator.scala:891)
at scala.collection.AbstractIterator.foreach(Iterator.scala:1334)
at scala.collection.MapLike$DefaultKeySet.foreach(MapLike.scala:174)
at com.sp.MigrationDriver$.main(MigrationDriver.scala:74)
at com.sp.MigrationDriver.main(MigrationDriver.scala)
Caused by: java.lang.NullPointerException
    at org.apache.spark.sql.execution.exchange.ShuffleExchangeExec$.needToCopyObjectsBeforeShuffle(ShuffleExchangeExec.scala:163)
    at org.apache.spark.sql.execution.exchange.ShuffleExchangeExec$.prepareShuffleDependency(ShuffleExchangeExec.scala:300)
    at org.apache.spark.sql.execution.exchange.ShuffleExchangeExec.prepareShuffleDependency(ShuffleExchangeExec.scala:91)
    at org.apache.spark.sql.execution.exchange.ShuffleExchangeExec$$anonfun$doExecute$1.apply(ShuffleExchangeExec.scala:128)
    at org.apache.spark.sql.execution.exchange.ShuffleExchangeExec$$anonfun$doExecute$1.apply(ShuffleExchangeExec.scala:119)
    at org.apache.spark.sql.catalyst.errors.package$.attachTree(package.scala:52)
    ... 37 more

What am i doing wrong here ? How to fix this ?

Solution

  • I'm not sure about the real cause, the only thing that caught my eye is following SQL expression: (SELECT * FROM BM_VALS WHERE ROWNUM <= 10) T - what the T means here?

    Regarding the overall design, I would recommend completely different approach. In your case you have 2 processors that work on the same data collected from Oracle, and each processor fetches the data separately. I would recommend to move the reading of Oracle data into separate procedure that will return data frame (you need to cache it), and then your processors will work on that data frame and persist data into Cassandra.

    Or as it was recommended before, you can separate the job into 2 pieces - one that pulls all the data from Oracle, and store the dataframe into disk (not persist, but using the write), for example, as Parquet file. And then separate job(s) that will take data from disk, and perform necessary transformations.

    In both scenarios you