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javagarbage-collectionjvmspring-batchjvm-arguments

Partial reading and writing data via Spring Batch - OutOfMemoryError: GC overhead limit exceeded


I'm running an application with spring batch jobs. When I try to collect and publish some data from one data source to another I get the following exception.

o.s.batch.core.step.AbstractStep -  Encountered an error executing step upload in job reviewsToYtBatchJob
java.lang.OutOfMemoryError: GC overhead limit exceeded
at com.mysql.jdbc.Buffer.<init>(Buffer.java:59)
at com.mysql.jdbc.MysqlIO.nextRow(MysqlIO.java:1967)
at com.mysql.jdbc.MysqlIO.readSingleRowSet(MysqlIO.java:3401)
at com.mysql.jdbc.MysqlIO.getResultSet(MysqlIO.java:483)
at com.mysql.jdbc.MysqlIO.readResultsForQueryOrUpdate(MysqlIO.java:3096)
at com.mysql.jdbc.MysqlIO.readAllResults(MysqlIO.java:2266)
at com.mysql.jdbc.ServerPreparedStatement.serverExecute(ServerPreparedStatement.java:1485)
at com.mysql.jdbc.ServerPreparedStatement.executeInternal(ServerPreparedStatement.java:856)
at com.mysql.jdbc.PreparedStatement.executeQuery(PreparedStatement.java:2318)
at com.zaxxer.hikari.pool.ProxyPreparedStatement.executeQuery(ProxyPreparedStatement.java:52)
at com.zaxxer.hikari.pool.HikariProxyPreparedStatement.executeQuery(HikariProxyPreparedStatement.java)
at org.springframework.batch.item.database.JdbcCursorItemReader.openCursor(JdbcCursorItemReader.java:126)

My questions are:

  • How to get heap size parameter?
  • How fetch data partially?

It works only in a small amount of data. I've also tried this:

reader.setFetchSize(CHUNK_SIZE); //JdbcCursorItemReader
uploadStep.chunk(CHUNK_SIZE);  //SimpleStepBuilder

CHUNK_SIZE tried from 100 to 10000 If I limit selected data with the size it works, heap size was not exceeded.

protected ItemReader<Review> reader() {
        JdbcCursorItemReader<Review> reader = new JdbcCursorItemReader<>();
        reader.setDataSource(dataScource);
        reader.setSql(
         //sql query
        );
        reader.setFetchSize(CHUNK_SIZE);
        reader.setRowMapper(
                (rs, rowNum) -> new Review(
                        rs.getLong("reviewId"),
                        //map data

                )
        );
        return reader;
    }

private ItemProcessor<Review, ReviewTo> processor() {
        return review -> new ReviewTo(
                //parameters
        );
    }
private ItemWriter<ReviewTo> writer() {
    return new ItemWriter<>(client);
}

private TaskletStep uploadStep() {
    SimpleStepBuilder<Review, ReviewTo> uploadStep = new SimpleStepBuilder<>(stepBuilderFactory.get("upload"));
    return uploadStep
            .chunk(CHUNK_SIZE)
            .reader(reader())
            .processor(processor())
            .writer(writer())
            .allowStartIfComplete(true)
            .build();
}

@Bean
public Job reviewsToYtBatchJob() {
    return jobBuilderFactory.get(JOB_NAME)
            .start(//generate table)
                    .build())
            .next(stepBuilderFactory.get("createTmpTable")
                    .tasklet(//step)
                    .build())
            .next(uploadStep())
            .next(stepBuilderFactory.get("moveTmpTableToDestination")
                    .tasklet(//step)
                    .build())
            .build();
}

Solution

  • There was not enough memory space. It worked with parameters CHUNK_SIZE = 100000 and -Xmx4g. There was a config file with arguments for virtual machine where I could increase heap size.