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rbioinformaticsgenome

KEGG Annotation

I have a set of genes (Amino acid sequences). I want to find the Kegg based functional annotations or KO ids. Is there any KEGG database available for download? I want to use blast with that database. Additionally, I was looking for R package that can help me in this regard.

Hope so I have clarified my query. Thanks for your response in advance.

Solution

  • KEGG database required subscription:

    https://www.bioinformatics.jp/en/keggftp.html

    Price list:

    https://www.bioinformatics.jp/docs/subscription_schedule.pdf

    If you remain interested here is listing of data available:

    https://www.kegg.jp/kegg/download/

    FASTA sequences are here:

    https://www.kegg.jp/kegg/download/Readme/README.fasta