I would like to facet a plot, but with a reference plot in each panel. Let me try to show with pictures what I want to achieve: My example data_frame:
require(dplyr)
df <- data_frame( id = c(rep('ctr',40), rep('pat',80)),
class = c(rep('ctr',40), rep(c('a','b'), each = 40)),
rank = rep (1:20,6),
mean = c(rep(seq(3,-3, length.out = 20),2),
rep(seq(1,-4, length.out = 20),2),
rep(seq(-2,-8, length.out = 20),2)),
sd = rep(seq(1.2,0.8, length.out = 20), times = 6),
exam = rep(c('blue','red'), each = 20, times = 3))
My plot:
# first, create reference plot of the 'controls'
require(ggplot2)
p_ctr <- ggplot() +
geom_line(data = filter(df, id == 'ctr'),
aes(x=rank, y=mean, color=exam), linetype=1) +
geom_ribbon(data = filter(df, id == 'ctr'),
aes(x = rank, ymax = mean+sd, ymin = mean-sd,
fill = exam), alpha = .1) +
scale_colour_manual(values = c("#00b6eb","#eb0041")) +
scale_fill_manual(values = c("#00b6eb","#eb0041"))
# then, overlay with plot of 'patients'
p_ctr + geom_line(data = filter(df, id == 'pat'),
aes(x=rank, y=mean, linetype = class)) +
geom_ribbon(data = filter(df, id == 'pat'),
aes(x = rank, ymax = mean+sd, ymin = mean-sd,
group = class),
alpha = .1) +
facet_wrap(~exam)
That is halfway there: Ideally, however, I would like to plot the different "classes" in separate panels, but with the control plot as a reference in each panel:
I have tried different combinations of facetting, without good result. I guess, there must be a simple solution?
Maybe like so.
library(dplyr)
library(ggplot2)
df1 <- filter(df, id == 'ctr')
df2 <- filter(df, id == 'pat')
df2 <- dplyr::rename(df2, class_2 = class)
p_ctr <- ggplot() +
geom_line(data = df1, aes(x=rank, y=mean, color=exam)) +
geom_ribbon(data = df1,
aes(x = rank, ymax = mean+sd, ymin = mean-sd, fill = exam),
alpha = .1) +
scale_colour_manual(values = c("#00b6eb","#eb0041")) +
scale_fill_manual(values = c("#00b6eb","#eb0041")) +
geom_line(data = df2,
aes(x=rank, y=mean)) +
geom_ribbon(data = df2,
aes(x = rank, ymax = mean+sd, ymin = mean-sd),
alpha = .1) +
facet_grid(class_2 ~ exam)
p_ctr
Using facet_wrap
gives me the following error:
error in gList(list(x = 0.5, y = 0.5, width = 1, height = 1, just = "centre", : only 'grobs' allowed in "gList"
You probably came across this plot while looking for the solution.
p_ctr + geom_line(data = filter(df, id == 'pat'),
aes(x=rank, y=mean)) +
geom_ribbon(data = filter(df, id == 'pat'),
aes(x = rank, ymax = mean+sd, ymin = mean-sd),
alpha = .1) +
# facet_wrap(~exam) +
facet_grid(class ~ exam)
This is basically your reference plot and its overlay, without the linetype
and group
arguments. Additionally I faceted by class ~ exam
. From this plot you see that 'the problem' is that class
contains three unique elements: a
, b
and ctr
. That's why I renamed the variable class
in df2
to be class_2
which has only two unique elements: a
and b
. Faceting by class_2 ~ exam
then gives the desired output.
I hope this helps.