I am using the OWL API to read an ontology file. My code is as below:
OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
IRI iri = IRI.create(new File("src\\main\\webapp\\resources\\inputfile\\20171218 ontology test v0.6.owl"));
System.out.println(iri);
//I am getting error in below line
OWLOntology moduleOWL = manager.loadOntologyFromOntologyDocument(iri);
I am getting the following exception. I have tried all the way to solve the problem, but did not succeed.
file:/D:/Company/Workspace/My%20Data/MyDATA/src/main/webapp/resources/inputfile/20171218%20ontology%20test%20v0.6.owl
Exception in thread "main" java.lang.NoSuchFieldError: UTF_32BE
at org.semanticweb.owlapi.io.DocumentSources.wrap(DocumentSources.java:248)
at org.semanticweb.owlapi.io.DocumentSources.getInputStreamFromContentEncoding(DocumentSources.java:284)
at org.semanticweb.owlapi.io.DocumentSources.connectWithFiveRetries(DocumentSources.java:227)
at org.semanticweb.owlapi.io.DocumentSources.getInputStream(DocumentSources.java:150)
at org.semanticweb.owlapi.io.DocumentSources.wrapInput(DocumentSources.java:115)
at org.semanticweb.owlapi.io.DocumentSources.wrapInputAsReader(DocumentSources.java:79)
at org.semanticweb.owlapi.io.DocumentSources.wrapInputAsReader(DocumentSources.java:96)
at org.semanticweb.owlapi.io.AbstractOWLParser.getInputSource(AbstractOWLParser.java:38)
at org.semanticweb.owlapi.rdf.rdfxml.parser.RDFXMLParser.parse(RDFXMLParser.java:59)
at uk.ac.manchester.cs.owl.owlapi.OWLOntologyFactoryImpl.loadOWLOntology(OWLOntologyFactoryImpl.java:188)
at uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.load(OWLOntologyManagerImpl.java:1072)
at uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java:1033)
at uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.loadOntologyFromOntologyDocument(OWLOntologyManagerImpl.java:973)
at com.ifour.mydata.test.ConvertXMLtoRDF.getOwlProperty(ConvertXMLtoRDF.java:402)
at com.ifour.mydata.test.ConvertXMLtoRDF.main(ConvertXMLtoRDF.java:114)
The problem occurs because you have a version of Apache Commons IO in your classpath that is incompatible with the Owl API.
I worked this out as follows...
I read the exception. It mentioned UTF_32BE
not being a field and said in which class and method the problem occurred, so I dug out the source code for Owl API's DocumentSources.wrap()
method:
public static InputStream wrap(InputStream delegate) {
checkNotNull(delegate, "delegate cannot be null");
return new BOMInputStream(delegate, ByteOrderMark.UTF_8, ByteOrderMark.UTF_16BE,
ByteOrderMark.UTF_16LE, ByteOrderMark.UTF_32BE, ByteOrderMark.UTF_32LE);
}
It references various UTF_*
fields on ByteOrderMark
, not all of which are failing. I found that ByteOrderMark
is imported from Apache Commons IO:
import org.apache.commons.io.ByteOrderMark;
If you look at the source for ByteOrderMark
, it has the field defined as follows:
/**
* UTF-32BE BOM (Big-Endian)
* @since 2.2
*/
public static final ByteOrderMark UTF_32BE = new ByteOrderMark("UTF-32BE", 0x00, 0x00, 0xFE, 0xFF);
Which suggests that you have an earlier than 2.2 version of Apache Commons IO on your classpath.