this question is related to R.
I have two data sets. Let say data sets A contains the following: Dataset A:
Date Market_Cap
2017-1-1 10
2017-1-2 30
2017-1-1 50
2017-1-5 100
2017-1-5 200
Another B contains the following:
Date Thr_Market_Cap
2017-1-1 30
2017-1-2 20
2017-1-5 110
I then want to compare dataset A and dataset B. The criteria is when the Date is the same and threshold market cap in dataset B is greater than the market cap in dataset A. Then I want to delete the row of dataset A of that entry when these two criteria satisfied.
The result after querying in dataset A is:
Data Market_Cap
2017-1-2 30
2017-1-5 200
2017-1-1 50
My dataset A contains 43,261,925 rows and dataset B contains 500 rows.
Please take a look at my code
A variable is dataset A and B variable is dataset B. Both are data frame.
A_row=dim(A)[1]
B_row=dim(B)[1]
cores <- parallel::detectCores()
cl<-makeSOCKcluster(cores) #change the to your number of CPU cores
registerDoSNOW(cl)
pb <- txtProgressBar(min=1, max=A, style=3)
progress <- function(n) setTxtProgressBar(pb, n)
opts <- list(progress=progress)
DEL <- foreach (i = 1:A_row, .options.snow=opts,
.combine='rbind') %dopar% {
for (j in 1:B_row){
if (A$Date[i] == B$Date[j]){
if(isTRUE(A$Market_Cap[i] < B$Thr_Market_Cap[j])){
return(i)
}
}
}
}
close(pb)
DEL variable then contains list of all the rows number that satisfies the two criteria and then I can use it to delete the row in dataset A
Adj_A= A[,-c(DEL)]
I tried writing this code with parfor but it does not work, DEL always return NULL. If I write it in basic non-parallel computation for loop, it works flawlessly. But it takes ages due to the large file size...
Can some one comment on this code and I also want to know if there is any other way which uses build-in R function or dplyr to clean this data?
Much appreciated!
Join B to A, then filter. With dplyr
:
left_join(A, B, by = "Date") %>% filter(Thr_Market_Cap <= Market_Cap)
If you want add %>% select(-Thr_Market_Cap)
to get rid of the extra column.
You're data is quite large, if you use data.table
instead this will probably be faster:
library(data.table)
setDT(A, key = "Date")
setDT(B, key = "Date")
A = B[A, on = "Date"][Thr_Market_Cap <= Market_Cap, ]