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javajquery-pluginsimagej

input data in a plugin during a loop - imageJ - Java

Totally new to Java, I have a stack of image that I need to change with ImageJ, I wrote a script that does what I need but I would like to add the plugin function Stack_Normalizer.class, that you can find here https://imagej.nih.gov/ij/plugins/normalizer.html

After I run the function it asks me to input the minimum and maximum values wanted (always the same in may case), since I have many thousands images I cannot to it manually, how can I set this values automatically in the pup up window? I tried setMinimum, setMaximum but no success. Here is part of the loop: 

makeRectangle(126, 20, 433, 422);
run("Crop");
run("Stack Normalizer");

here I need to set the values in the pop up window. Then the loop continue...

run("8-bit");
setThreshold(0,79);
run("Threshold");
Solution

  • I found the answer, to input value in the pop-up window it's enough to add the following when calling the function:

    run( "Stack Normalizer", "minimum=22 maximum=220" )