I have a project that containst source/header files that are from 3rd party. In my project I have the same filename in a different path (e.g. version.h). The scanner is resolving the includes to the wrong file and therefore fails to parse my source files properly.
That's what I have done:
How can I force eclipse to only resolve the files based on the configured include and source pathes?
You can try turning off Allow heuristic resolution of includes. This is a global setting in Preferences -> C/C++ -> Indexer. It can also be overridden per project in the project's settings.