I use a cuda kernel to do a sigmoid activation on a thrust vector:
thrust::device_vector<float> output = input;
float * output_ptr = thrust::raw_pointer_cast( output.data() );
sigmoid_activation<<<num_blocks_x,block_threads_x>>>( output_ptr );
where my kernel is:
__device__ float sigmoid_function( float input, float skew )
{
// -X: Neg X
float x_neg = __fmul_rz( -1.f, input );
// Y: exponential value
float exp_val = __expf( x_neg );
// 1 + exp^(-X)
float denom = __fadd_rz( 1.f, e_to_x_neg );
// 1 / 1 + exp^(-X)
float output = __fdividef( 1.f, denom );
if ( skew != 0.0 )
return _fadd_rz( output, skew );
else
return output;
}
__global__ void sigmoid_activation( float * input float skew )
{
// Iterate Input vector
int x = blockIdx.x * blockDim.x + threadIdx.x;
// Update value
input[x] = sigmoid_function( input[x], skew );
}
How can I use thrust::replace with a functor / predicate to do the same?
The examples I have seen are too simplistic to demonstrate such use:
thrust::replace(Y.begin(), Y.end(), 1, 10);
Or
thrust::transform(X.begin(), X.end(), Y.begin(),thrust::negate<int>());
In the "Thrust Quick Start Guide" on page 8-9 there is an example on how to create your own functions for transform.
I came up with a solution, but notice this will not run on the host side because you use CUDA intrinsics.
Code
#include <thrust/device_vector.h>
#include <thrust/transform.h>
#include <thrust/sequence.h>
#include <thrust/copy.h>
#include <thrust/fill.h>
#include <thrust/replace.h>
#include <thrust/functional.h>
#include <iostream>
template<typename T>
struct sigmoid_function
{
float _skew;
sigmoid_function(float skew) : _skew(skew) { /*Empty */ }
typedef T argument_type;
typedef T result_type;
__device__ T operator()(const T &x) const {
float x_neg = __fmul_rz( -1.f, x );
float exp_val = __expf( x_neg );
float denom = __fadd_rz( 1.f, __expf(-exp_val) );
float output = __fdividef( 1.f, denom );
if ( _skew != 0.0 )
return __fadd_rz( output, _skew );
else
return output;
}
};
int main(void) {
// allocate three device_vectors with 10 elements
thrust::device_vector<float> X(10);
// initialize X to 0,1,2,3, ....
thrust::sequence(X.begin(), X.end());
// Before
thrust::copy(X.begin(),X.end(),std::ostream_iterator<float>(std::cout, "\n"));
// Apply
thrust::transform(X.begin(), X.end(), X.begin(), sigmoid_function<float>(0.1));
// After
thrust::copy(X.begin(),X.end(),std::ostream_iterator<float>(std::cout, "\n"));
return 0;
}