I have just installed PyMC on my mac (10.9.4) using anaconda (Anaconda 2.0.1) and the following command I copied from the pymc distribution page:
conda install -c https://conda.binstar.org/pymc pymc
Everything seemed to be alright during the installation (no error messages, all the fetching completed). Then when I imported it I got the following error messages:
>>> import pymc
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/anaconda/lib/python2.7/site-packages/pymc/__init__.py", line 30, in <module>
from .CommonDeterministics import *
File "/anaconda/lib/python2.7/site-packages/pymc/CommonDeterministics.py", line 21 in <module>
from .utils import safe_len, stukel_logit, stukel_invlogit, logit, invlogit, value, find_element
File "/anaconda/lib/python2.7/site-packages/pymc/utils.py", line 14, in <module>
from . import flib
ImportError: dlopen(/anaconda/lib/python2.7/site-packages/pymc/flib.so, 2): Library not loaded: /usr/local/Cellar/gfortran/4.8.2/gfortran/lib/libgfortran.3.dylib
Referenced from: /anaconda/lib/python2.7/site-packages/pymc/flib.so
Reason: image not found
I am new to python and I don't really know what to do next to not mess up. I typed this to find other packages:
binstar search -t conda pymc
Packages:
Name | Access | Package Types | Summary
------------------------- | ------------ | --------------- | --------------------
asmeurer/pymc | public | conda | https://github.com/pymc-devs/pymc
auto/pymcu | published | conda | http://www.pymcu.com
bkreider/pymc | public | conda | https://github.com/pymc-devs/pymc
datamicroscopes/pymc | public | conda | None
fonnesbeck/pymc | public | conda | https://github.com/pymc-devs/pymc
jonsedar/pymc | public | conda | None
pymc/pymc | public | conda | None
rsignell/pymc | public | conda | Markov Chain Monte Carlo sampling toolkit.
tobeplugged/pymc | public | conda | None
tomku-test/pymc | published | conda | https://github.com/pymc-devs/pymc
so, should I just try to reinstall pymc using one of these packages, and if so, is the command the following?:
conda install -c https://github.com/pymc-devs/pymc pymc
should I remove 1st the package previously installed? or the new installation will over-write(?). Or perhaps it is easy to fix those errors I found before?
Thanks
You are missing gfortran. If you haven't first install brew:
ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"
Follow the instructions and once brew is correctly set up just do:
brew install gfortran