I have looked over the Repository pattern and I recognized some ideas that I was using in the past which made me feel well.
However now I would like to write an application that would use this pattern BUT I WOULD LIKE TO HAVE THE ENTITY CLASSES DECOUPLED from the repository provider.
I would create several assemblies :
Studying LINQ to SQL which looks very productive in terms of time taken to implement all seems well until I discover the deep dependency between the generated classes and the CustomDataContext class.
How can I use LINQ to SQL in such a scenario?
I don't know if this is exactly what you want, but you may want to take a look at Rob Conery's MVC Storefront code. He uses a variant of the repository pattern with a linq provider. He maps the LINQ to Sql objects to domain objects and then returns the domain objects from the repository provider to a service layer which wraps the provider allowing him to work some logic on the data returned before it hits the business layer.
To me it sounds like you want the providers to return DTOs and then you want to map the DTOs to the domain objects in the repository/service layer. If this is the case you could map your LINQ to SQL provider to the DTOs, have it return them, then map the DTOs to domain objects in the repository/service layer. This should work just fine, but it may become tedious as you now would have 2 mapping layers.
In this case you would have: ProductService, which takes an IProductRepository. It evokes methods on the IProductRepository to get back your DTOs. It then maps the DTOs to the real business objects and returns them to the calling code.