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javaimage-processingimagejminc

Read MINC (mnc) file

I want to read a .mnc file I've downloaded from http://brainweb.bic.mni.mcgill.ca/brainweb/. This file contains simulated data of MRI scanning of a human brain. What I want is, to read the file using java code and convert it into buffer image object so that I can process buffer image object.

Solution

  • Bio-Formats can read MINC MRI files. Use BF.openImagePlus(String path) to open the file as an ImagePlus:

    ImagePlus imp = BF.openImagePlus(path);

    You can then use ImageJ to work with the pixel data (i.e. using an ImageProcessor or, if necessary, a BufferedImage).