I've a magento installation with 3 websites whit 3 storeview each. Everything works fine a part google analitycs. I want to have a different account associated to each website to have separate statistics. The main site works perfectly but the other 2 no. I don't see any traffics, visit piratically nothing. Thanks for your support, bye Enrico
Goto Admin -> Config -> Google Api
Then change the "Current Configuration Scope" for the other 2 websites and enter each GA Account Number.
View source on each domain to check if the GA Code is there and correct.
You may also want to take a look @ GA Tracking Multiple Domains