jahmm-how to generate output states for a given sequence using a trained HMM

Question

I used Jahmm to train an HMM using my input sequence. After the training is complete, I have learnt HMM model and my initial input sequence. How do I generate the output states for the input sequence using the learnt HMM model?

Answer 1

I assume you are looking for the most likely state sequence for a given input sequence. This can be retrieved using ViterbiCalculator.stateSequence() in the jahmm package, see the Javadoc.