samtools - dyld: Library not loaded: @rpath/libcrypto.1.0.0.dylib...

How to run a command on multiple files within subdirectories with similar file suffix?...

Regular Expression - how to capture a number of characters specified in the string...

In bioinformatics, what is a singleton?...

Split a SAM file in Awk keeping N number of lines as header...

How to find the base using the chromosome number and position?...

MissingOutputException snakemake...

Is there any way to pass a bed file or similar with target regions to samtools coverage?...

How to locate the position of non-missing sequence in the fasta...

My merge overlapping coordinate python script cost too much memory...

Using SAMtools and storing outputs for a large number of files...

How to activate conda environment in GitHub Actions?...

iterate through files in python script and execute bash command...

Extracting lines from file using grep in a for loop, exporting to new file with variable in file nam...

Piping commands withing GNU parallel (samtools)...

Snakemake Conda environment does not seem to be activating though it says it is...

Multiple outputs to single list input - merging BAM files in Nextflow...

How to pipe samtools mileup with varscan trio caller?...

applying restriction of files for a loop (for loop) using bowtie2...

How to most efficiently retrieve data from NarrowPeak (BED6+4) format files?...

where to copy samtools binary to some directories...

How to write rules for software with version specific shell calls? (E.g. Samtools 1.3.1 and 0.1.18)...

Perl: Create index for tab file with two columns...

Extracting unmapped reads where both mates are unmapped using samtools?...

How to split paired-end fastq files?...

Remove character from the middle of a string...

BWA can't find the local index file...

How to build a simple main.cpp file using samtools C API...

Makefile - samtools installation failed...

Filter a file to find rows that match in one column but differ in another column...