Changing phylogenetic tree tip labels in R (read.tree) for all tips (e.g adding in a ' ' or ...

Exporting non-dataframe data to a text file in R...

Creating a compartive object in R from two dataframes for comparitive phylogenetics...

ape package - print generated tree...

Unable to save/write tree data that plotBS() results...

Identifying mutations between haplotypes using haploNet (pegas) in R...

Plot squares close to phylogeny taxa...

Link tip labels to phylogenetic tree using dots...

How to create Newick tree format from raw morphology data in R on Mac OSX...

R - Running functions on multiple pylogenetic trees (multiPhylo objects)...

Comparing changes across two matrices...

How to manipulate the tip colours of a phylogenetic diversity plot...

Apply ifelse function to colour tips of phylogenetic fan...

r - phyloseq - ordination of taxa other than species (family, order, etc.)...

Skipping slow tasks in a loop in R...

Bootstrapped tree values differ from PAST...

Can I use phyl.vcv function in "phytools" to compute a phylogenetic Pearson r...

Construct a circular phylogenetic tree...

Error using treedata() from geiger package in R...

Specifying colours in phylogenetic ancestral state reconstruction...

plot phylogenetic logistic regression with binary response variable...

Python ete3 - Is there a way to stretch branches of phylogenetic trees?...

Italics and regular text in phylogeny tip labels in R...

Draw on a phylogeny edge with R...

ETE2 - One Child Node with Multiple Parents?...

How to convert a tree drawn with ete2 to Newick format?...

Using python 3.x how can I pass a Tree object from ete3 to DendroPy without writing to file...

Phylogenetics in R: different results when working on a tree compared to reading it in...

Biopython bootstrapping phylogenetic trees with custom distance matrix...

Phylogenetics in R: collapsing descendant tips of an internal node...