I'm doing some analysis something like this:
library(plyr)
input.files <- c("file1.txt", "file2.txt", "file3.txt")
input.data <- llply(input.files, load.file, .parallel=TRUE)
step.one.results <- llply(input.data, step.one, .parallel=TRUE)
step.two.results <- llply(step.one.results, step.two, .parallel=TRUE)
...
step.N.results <- llply(`step.N-1.results`, step.N, .parallel=TRUE)
...
Is there any way to make all the plyr functions parallel by default, so I don't always have to specify .parallel=TRUE
for each step?
library(Defaults)
setDefaults(llply, .parallel=TRUE)
You'd have to setDefaults
on every function for which you want to change the default formals. You can put this in your .Rprofile if you like.
You can also mess with the formals directly. e.g.
formals(llply)$.parallel <- TRUE
should work.