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imagematlabsavetiff

matlab: how to save TIFF series?


Lets say I have a 3D array 'img' (x, y, frame) and want to save it as a TIFF. So far I was doing it by saving one-by-one like this:

for K=1:length(img(1, 1, :))
   outputFileName = sprintf('img_%d.tif',K);
   imwrite(img(:, :, K), outputFileName);
end

cool, but what if I want to save it as a one tiff stack? How to do it? Thanks :)


Solution

  • The parameter 'append' seems to correspond to what you want.

    outputFileName = 'img_stack.tif'
    for K=1:length(img(1, 1, :))
       imwrite(img(:, :, K), outputFileName, 'WriteMode', 'append');
    end
    

    EDIT: IMAGEJ has problems when opening multipletiffs saved like that. 'Compression','none' is solving the problem :) use:

    imwrite(img(:, :, K), outputFileName, 'WriteMode', 'append',  'Compression','none');