So I have a 3d tif pixel image and want to draw a 3d drape over the non_zero non_null pixels
At first I worked in a 2d manner and passed on every slice and tried to draw a shape around and then plot them to form a 3d shape but it doesnt seem to work out
I tried the 3d suite in fiji using 3D drawing ROIs but it only drew a fixed 2d circle on every slice
I built a convexHull with the help of this answer which fit what I was looking for
hull = ConvexHull(data)
fig = plt.figure()
ax = fig.add_subplot(111, projection="3d")
# Plot defining corner points
ax.plot(data.T[0], data.T[1], data.T[2], "ko")
# 12 = 2 * 6 faces are the simplices (2 simplices per square face)
for s in hull.simplices:
s = np.append(s, s[0]) # Here we cycle back to the first coordinate
ax.plot(data[s, 0], data[s, 1], data[s, 2], "r-")
# Make axis label
for i in ["x", "y", "z"]:
eval("ax.set_{:s}label('{:s}')".format(i, i))
plt.show()