I am trying to install Apache superset on Centos7 machine with python3.8.
On executing superset db upgrade command it throws below error.
INFO [alembic.runtime.migration] Running upgrade 06e1e70058c7 -> a39867932713, query_context_to_mediumtext
INFO [alembic.runtime.migration] Running upgrade a39867932713 -> 409c7b420ab0, add created_by_fk as owner
INFO [alembic.runtime.migration] Running upgrade 409c7b420ab0 -> ffa79af61a56, rename report_schedule.extra to extra_json
Traceback (most recent call last):
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1900, in _execute_context
self.dialect.do_execute(
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 736, in do_execute
cursor.execute(statement, parameters)
sqlite3.OperationalError: near "extra": syntax error
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/masayyed/superset/venv/bin/superset", line 33, in <module>
sys.exit(load_entry_point('apache-superset==2.1.0', 'console_scripts', 'superset')())
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/click/core.py", line 1130, in __call__
return self.main(*args, **kwargs)
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/flask/cli.py", line 567, in main
return super().main(*args, **kwargs)
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/click/core.py", line 1055, in main
rv = self.invoke(ctx)
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/click/core.py", line 1657, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/click/core.py", line 1657, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/click/core.py", line 1404, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/click/core.py", line 760, in invoke
return __callback(*args, **kwargs)
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/click/decorators.py", line 26, in new_func
return f(get_current_context(), *args, **kwargs)
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/flask/cli.py", line 407, in decorator
return __ctx.invoke(f, *args, **kwargs)
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/click/core.py", line 760, in invoke
return __callback(*args, **kwargs)
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/flask_migrate/cli.py", line 149, in upgrade
_upgrade(directory, revision, sql, tag, x_arg)
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/flask_migrate/__init__.py", line 98, in wrapped
f(*args, **kwargs)
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/flask_migrate/__init__.py", line 185, in upgrade
command.upgrade(config, revision, sql=sql, tag=tag)
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/alembic/command.py", line 378, in upgrade
script.run_env()
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/alembic/script/base.py", line 576, in run_env
util.load_python_file(self.dir, "env.py")
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/alembic/util/pyfiles.py", line 94, in load_python_file
module = load_module_py(module_id, path)
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/alembic/util/pyfiles.py", line 110, in load_module_py
spec.loader.exec_module(module) # type: ignore
File "<frozen importlib._bootstrap_external>", line 843, in exec_module
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/superset/extensions/../migrations/env.py", line 126, in <module>
run_migrations_online()
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/superset/extensions/../migrations/env.py", line 118, in run_migrations_online
context.run_migrations()
File "<string>", line 8, in run_migrations
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/alembic/runtime/environment.py", line 868, in run_migrations
self.get_context().run_migrations(**kw)
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/alembic/runtime/migration.py", line 622, in run_migrations
step.migration_fn(**kw)
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/superset/migrations/versions/2022-07-11_11-26_ffa79af61a56_rename_report_schedule_extra_to_extra_.py", line 36, in upgrade
op.alter_column(
File "<string>", line 8, in alter_column
File "<string>", line 3, in alter_column
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/alembic/operations/ops.py", line 1879, in alter_column
return operations.invoke(alt)
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/alembic/operations/base.py", line 401, in invoke
return fn(self, operation)
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/alembic/operations/toimpl.py", line 50, in alter_column
operations.impl.alter_column(
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/alembic/ddl/impl.py", line 304, in alter_column
self._exec(
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/alembic/ddl/impl.py", line 193, in _exec
return conn.execute( # type: ignore[call-overload]
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1380, in execute
return meth(self, multiparams, params, _EMPTY_EXECUTION_OPTS)
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/sqlalchemy/sql/ddl.py", line 80, in _execute_on_connection
return connection._execute_ddl(
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1472, in _execute_ddl
ret = self._execute_context(
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1943, in _execute_context
self._handle_dbapi_exception(
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 2124, in _handle_dbapi_exception
util.raise_(
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/sqlalchemy/util/compat.py", line 211, in raise_
raise exception
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1900, in _execute_context
self.dialect.do_execute(
File "/home/masayyed/superset/venv/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 736, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) near "extra": syntax error
[SQL: ALTER TABLE report_schedule RENAME extra TO extra_json]
(Background on this error at: https://sqlalche.me/e/14/e3q8)
Below mentioned commands I am using for installation.
sudo yum upgrade python-setuptools
sudo yum install gcc gcc-c++ libffi-devel python-devel python-pip python-wheel openssl-devel cyrus-sasl-devel openldap-devel
python3.8 -m pip install virtualenv
python3.8 -m venv venv
. venv/bin/activate
python3.8 -m pip install --upgrade setuptools pip
python3.8 -m pip install apache-superset
superset db upgrade
Below list of packages with version
(venv) [masayyed@vm1 superset]$ python3.8 -m pip list
Package Version
---------------------- ---------
alembic 1.10.3
amqp 5.1.1
apache-superset 2.1.0
apispec 5.2.2
async-generator 1.10
async-timeout 4.0.2
attrs 22.2.0
Babel 2.12.1
backoff 2.2.1
bcrypt 4.0.1
billiard 3.6.4.0
bleach 3.3.1
Brotli 1.0.9
cachelib 0.4.1
celery 5.2.7
certifi 2022.12.7
cffi 1.15.1
click 8.1.3
click-didyoumean 0.3.0
click-plugins 1.1.1
click-repl 0.2.0
colorama 0.4.6
convertdate 2.4.0
cron-descriptor 1.2.35
croniter 1.3.10
cryptography 39.0.2
Deprecated 1.2.13
deprecation 2.1.0
dnspython 2.3.0
email-validator 1.3.1
exceptiongroup 1.1.1
Flask 2.1.3
Flask-AppBuilder 4.3.1
Flask-Babel 2.0.0
Flask-Caching 1.10.1
Flask-Compress 1.13
Flask-JWT-Extended 4.4.4
Flask-Limiter 3.3.0
Flask-Login 0.6.0
Flask-Migrate 3.1.0
Flask-SQLAlchemy 2.5.1
flask-talisman 1.0.0
Flask-WTF 1.0.1
func-timeout 4.3.5
geographiclib 2.0
geopy 2.3.0
graphlib-backport 1.0.3
greenlet 2.0.2
gunicorn 20.1.0
h11 0.14.0
hashids 1.3.1
hijri-converter 2.2.4
holidays 0.17.2
humanize 4.6.0
idna 3.4
importlib-metadata 6.2.0
importlib-resources 5.12.0
isodate 0.6.1
itsdangerous 2.1.2
Jinja2 3.1.2
jsonschema 4.17.3
kombu 5.2.4
korean-lunar-calendar 0.3.1
limits 3.3.1
Mako 1.2.4
Markdown 3.4.3
markdown-it-py 2.2.0
MarkupSafe 2.1.2
marshmallow 3.19.0
marshmallow-enum 1.5.1
marshmallow-sqlalchemy 0.26.1
mdurl 0.1.2
msgpack 1.0.5
numpy 1.23.5
ordered-set 4.1.0
outcome 1.2.0
packaging 23.0
pandas 1.5.3
paramiko 3.1.0
parsedatetime 2.6
pgsanity 0.2.9
pip 23.0.1
pkgutil_resolve_name 1.3.10
polyline 2.0.0
prison 0.2.1
prompt-toolkit 3.0.38
pyarrow 10.0.1
pycparser 2.21
Pygments 2.14.0
PyJWT 2.6.0
PyMeeus 0.5.12
PyNaCl 1.5.0
pyparsing 3.0.9
pyrsistent 0.19.3
PySocks 1.7.1
python-dateutil 2.8.2
python-dotenv 1.0.0
python-geohash 0.8.5
pytz 2023.3
PyYAML 6.0
redis 4.5.4
rich 13.3.3
selenium 4.8.3
setuptools 67.6.1
simplejson 3.19.1
six 1.16.0
slack-sdk 3.21.0
sniffio 1.3.0
sortedcontainers 2.4.0
SQLAlchemy 1.4.47
SQLAlchemy-Utils 0.38.3
sqlparse 0.4.3
sshtunnel 0.4.0
tabulate 0.8.10
trio 0.22.0
trio-websocket 0.10.2
typing_extensions 4.5.0
urllib3 1.26.15
vine 5.0.0
wcwidth 0.2.6
webencodings 0.5.1
Werkzeug 2.2.3
wrapt 1.15.0
wsproto 1.2.0
WTForms 2.3.3
WTForms-JSON 0.3.5
XlsxWriter 3.0.9
zipp 3.15.0
I found this issue was with Sqlite only. I have replaced Sqlite with postgres database.
SQLALCHEMY_DATABASE_URI = 'postgresql://postgres:postgres@localhost/postgres'
It worked fine.