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rggplot2shinyplotlyoverlap

Adjusting vertical space for rotated x-axis labels in ggplot2 and plotly for a Shiny app


tl;dr version: For a faceted plotly, I need a way to

  1. Estimate the relative size of plotly chart elements (plot area, labels)
  2. Manipulate the relative space allowed for the different elements in the plotly
  3. Based on a criterion, e.g. minimum plot area size, define an absolute size of the plotly.

I am currently building a Shiny app for performing basic exploratory data analysis on various datasets. I'm using ggplot2 along with plotly to create histograms for different factors. However, I'm facing an issue when it comes to displaying long factor names on the x-axis. I tried rotating the labels to make them fit better, but plotly doesn't seem to allocate enough vertical space for them, causing the labels to intersect with the plot area. Here's a screenshot to better illustrate my problem:

Screenshot

So my questions are:

  1. How can I adjust the vertical space for the labels?
  2. How can I do this dynamically, depending on the length of the longest factor name?

Or maybe I am asking the wrong question. Is it a bad idea to mess with plot dimensions manually altogether and should I just try something else?

Additionally, I noticed that the plot area becomes quite small in certain cases. So here is a bonus question: How can I estimate the size the entire plot would need, so I can scale the total height dynamically, so that nothing gets cut off.

Below is a minimal working example with dummy data from the synthpop package:

library(shiny)
library(tidyverse)
library(plotly)
library(synthpop) # for example data

# generate example data frame
data <- synthpop::SD2011 |>
  select(where(is.factor)) |>
  slice(1:6)

ui <- fluidPage(
    sidebarLayout(
        sidebarPanel(),
        mainPanel(
           plotlyOutput("hist_plot")
        )
    )
)

server <- function(input, output) {
  hist_plot <- reactive({
    data |>
      pivot_longer(cols=everything(), names_to = "key", values_to = "value") |>
      ggplot(aes(x=value)) +
      geom_bar() +
      facet_wrap(~key, nrow = 2, scales = "free_x") +
      theme(
        axis.text.x = element_text(angle = 90))
  })

    output$hist_plot <- renderPlotly({
      req(hist_plot)
      ggplotly(hist_plot())
    })
}
shinyApp(ui = ui, server = server)

Here are some things I tried/considered:

  • Not using plotly, but just sticking with ggplot2 and use renderPlot(). This, however, makes the plots appear blurry in the app and it has it own scaling and overlapping problems.
  • changing the label rotation and allowing for more horizontal space by increasing the default app width. However, with the use case I have, I need to be able to run the app with the run app button in Rstudio, and this does not allow changing the default size, see here
  • manually adjusting the height of the plot, e.g. with plotlyOutput("hist_plot", height = "1000px"). This somewhat solves the problem when I know what total size I need, but it also increases both the size of the plot area and for the labels. Ideally, we should be able to control the size of both the overall chart size and the plot independently of each other.
  • I considered everything that is explained in this great guide here, but none of it is applicable in my case.

Edit: added tl:dr section


Solution

  • Since I don't know what else is in your app, I doubt this is a 'one shot' answer. After you've gone through it, let me know what you're thinking, if it's not working out for you. I am certain this is not perfect. There is too much static sizing for that to happen.

    A few things to note, relevant to this answer

    • When you took this from ggplot to plotly it did some hokey, yet expected, things
    • facet labels are plotly.annotations
    • facet label boxes are plotly.shapes
    • individual plots are set at opposing ends of the y-axis domain
      • Each axis, by default has a domain of [0, 1] (you could change it, but why??)
      • With the bottom row of plots at the bottom of the domain, your labels were never going to be easily addressed...

    This is what I did

    In styling
    • I added scaled text sizing to the x-axis labels (based on viewscreen size)
    • I did not add scaled text sizing to the facet labels, y-axis labels, or the axis titles
    • I changed the plot height to be dynamic (based on viewscreen height)
    In the fixer() function
    • captured the top of the plots' position in the y-axis domain
    • modified the positions of all features controlled or relevant to the bottom plots' positions
      • the shapes yanchor
      • the annotations y position
      • the individual domain positions for 'bottom' row plots
    The code

    Most of the code is not changed from the code in your question. Look for my comments in the code to note the changes. If you have questions, I'm but a comment away.

    library(shiny)
    library(tidyverse)
    library(plotly)
    library(synthpop) # for example data
    
    # generate example data frame
    data <- synthpop::SD2011 |>
      select(where(is.factor)) |>
      slice(1:6)
    
    fixer <- function(pt) {                              # <--- I added
      rg <- pt$x$layout$yaxis2$domain[2]                           # graph size based on domain
      lapply(1:length(pt$x$layout$shapes), function(i) {           # modify shapes
        if(isTRUE(pt$x$layout$shapes[[i]]$yanchor == rg)) {        # isTRUE for errors
          pt$x$layout$shapes[[i]]$yanchor <<- 2.5 * rg             # move grey squares up
        }
      })
      lapply(1:length(pt$x$layout$annotations), function(j) {      # modify annotations
        if(isTRUE(round(pt$x$layout$annotations[[j]]$y, 6) == round(rg, 6))) { ## isTRUE for errors
          pt$x$layout$annotations[[j]]$y <<- 2.5 * rg              # move facet labels up
        }
      })
      pt$x$layout$yaxis2$domain <- c(1.5 * rg, 2.5 * rg)          # modify plot positions
      pt
    }
    
    ui <- fluidPage(
      tags$head(                                        # <--- I added
        tags$style(HTML(  # dynamic x-axis labels' size; dynamic plot height
          ".xaxislayer-above text{
            font-size: calc(6px + 6 * ((100vw - 300px) / (1600 - 300))) !important;
          }
          #hist_plot{
            height: 75vh !important;
          }"))
      ),
      sidebarLayout(
        sidebarPanel(),
        mainPanel(
          plotlyOutput("hist_plot")
        )
      )
    )
    
    server <- function(input, output) {
      hist_plot <- reactive({
        data |>
          pivot_longer(cols=everything(), names_to = "key", values_to = "value") |>
          ggplot(aes(x=value)) +
          geom_bar() +
          facet_wrap(~key, nrow = 2, scales = "free_x") +
          theme(
            axis.text.x = element_text(angle = 90))
      })
      
      output$hist_plot <- renderPlotly({
        req(hist_plot)
        ggplotly(hist_plot()) %>% 
          layout(margin = list(b = 100)) %>% fixer()        # <--- I added
      })
    }
    shinyApp(ui = ui, server = server)
    

    enter image description here