Update records of dataframe where row names equal to column names

Hello I have a large dataframe where I have need to update or fill in the missing values. The condition is that the correct value should be in respect to row name matching to a column name. For example:

df <- data.frame(
  
  ID = c("x", "y", "z"), 
  x = c("1", "0.45", "0.47"),
  y = c("0.45", "1", "0.65"),
  z = c("XXXX", "XXXX", "1")
)

  ID    x    y    z
1  x    1 0.45 XXXX
2  y 0.45    1 XXXX
3  z 0.47 0.65    1

Above, the correct values for xxxx should be 0.47 and 0.65, respectively. Because x col z row has 0.47. Then y col z row is 0.65.The dataframe then looks like this:

  ID    x    y    z
1  x    1 0.45 0.47
2  y 0.45    1 0.65
3  z 0.47 0.65    1

This way all the elements row wise or column wise would correspond to matching rowname and column name.

I have looked into these posts but I couldn't use them to advance my solutions:

Solution

We could do this in base R

i1 <- upper.tri(df[-1])
i2 <- lower.tri(df[-1])
 df[-1][i1] <- df[-1][i2]

-output

> df
  ID    x    y    z
1  x    1 0.45 0.47
2  y 0.45    1 0.65
3  z 0.47 0.65    1

Or use coalesce

library(dplyr)
df[-1][upper.tri(df[-1])] <- coalesce(na_if(df[-1][upper.tri(df[-1])], 
        "XXXX"), df[-1][lower.tri(df[-1])])

Or may convert to 'long' format and then reshape back to wide format after filling

library(dplyr)
library(tidyr)
library(stringr)
df %>% 
  mutate(across(everything(),  ~  na_if(.x, "XXXX"))) %>% 
  pivot_longer(cols = -ID) %>%
  group_by(ID2 = str_c(pmin(ID, name), pmax(ID, name))) %>% 
  fill(value, .direction = "downup") %>% 
  ungroup %>% 
  select(-ID2) %>% 
  pivot_wider(names_from = name, values_from = value)

-output

# A tibble: 3 × 4
  ID    x     y     z    
  <chr> <chr> <chr> <chr>
1 x     1     0.45  0.47 
2 y     0.45  1     0.65 
3 z     0.47  0.65  1