In the below example, the html carriage returns stick around when converting to LaTeX. Is there a way in gt/gtsummary to get return characters that are correct in LaTeX?
library(gtsummary)
tbl <-
lm(time ~ ph.ecog + sex, survival::lung) %>%
tbl_regression(label = list(ph.ecog = "ECOG Score", sex = "Sex"))
add_significance_stars_ex3 <-
tbl %>%
add_significance_stars(
hide_se = TRUE,
pattern = "{estimate}{stars}<br>({std.error})"
) %>%
modify_header(estimate ~ "**Beta (SE)**") %>%
modify_footnote(estimate ~ "SE = Standard Error", abbreviation = TRUE) %>%
as_gt() %>%
gt::tab_style(
style = "vertical-align:top",
locations = gt::cells_body(columns = label)
)
add_significance_stars_ex3 %>%
gt::as_latex() %>%
cat()
#> \captionsetup[table]{labelformat=empty,skip=1pt}
#> \setlength{\LTpost}{0mm}
#> \begin{longtable}{lc}
#> \toprule
#> \textbf{Characteristic} & \textbf{Beta (SE)}\textsuperscript{1,2} \\
#> \midrule
#> ECOG Score & -58**<br>(19.1) \\
#> Sex & 52<br>(27.9) \\
#> \bottomrule
#> \end{longtable}
#> \begin{minipage}{\linewidth}
#> \textsuperscript{1}*p\textless{}0.05; **p\textless{}0.01; ***p\textless{}0.001\\
#> \textsuperscript{2}SE = Standard Error\\
#> \end{minipage}
Created on 2022-08-15 by the reprex package (v2.0.1)
Session infosessioninfo::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#> setting value
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#> ──────────────────────────────────────────────────────────────────────────────
You have specified a pattern with an HTML line break hard-coded into the cell: pattern = "{estimate}{stars}<br>({std.error})". Use a latex linebreaker here instead.
However, I recommend to use as_kable_extra() because it's bee written to support \n as a line breaker.
library(gtsummary)
#> #StandWithUkraine
tbl <-
lm(time ~ ph.ecog + sex, survival::lung) %>%
tbl_regression(label = list(ph.ecog = "ECOG Score", sex = "Sex"))
add_significance_stars_ex3 <-
tbl %>%
add_significance_stars(
hide_se = TRUE,
pattern = "{estimate}{stars} \n({std.error})"
) %>%
modify_header(estimate ~ "**Beta (SE)**") %>%
modify_footnote(estimate ~ "SE = Standard Error", abbreviation = TRUE)
add_significance_stars_ex3 %>%
as_kable_extra(escape = FALSE, format = 'latex') %>%
cat()
#>
#> \begin{tabular}{l|c}
#> \hline
#> \textbf{Characteristic} & \textbf{Beta (SE)}\\
#> \hline
#> ECOG Score & \makecell[c]{-58**\ \ \\(19.1)}\\
#> \hline
#> Sex & \makecell[c]{52\ \ \\(27.9)}\\
#> \hline
#> \multicolumn{2}{l}{\rule{0pt}{1em}\textsuperscript{1} \textit{p<0.05; \textbf{p<0.01; }}p<0.001}\\
#> \multicolumn{2}{l}{\rule{0pt}{1em}\textsuperscript{2} SE = Standard Error}\\
#> \end{tabular}
Created on 2022-08-15 by the reprex package (v2.0.1)