I'm trying to install a github file through bash following these instructions
https://github.com/allenai/s2orc-doc2json
bash scripts/setup_grobid.sh
but I'm getting the following error
bash scripts/setup_grobid.sh
SYSTEM_WGETRC = c:/progra~1/wget/etc/wgetrc
syswgetrc = c:/progra~1/wget/etc/wgetrc
--2022-07-21 20:55:25-- https://github.com/kermitt2/grobid/archive/0.6.1.zip
Resolving github.com... 140.82.121.4
Connecting to github.com|140.82.121.4|:443... connected.
OpenSSL: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
Unable to establish SSL connection.
unzip: cannot find or open 0.6.1.zip, 0.6.1.zip.zip or 0.6.1.zip.ZIP.
rm: cannot remove '0.6.1.zip': No such file or directory
scripts/setup_grobid.sh: line 11: cd: /c/Users/User/grobid-0.6.1: No such file or directory
scripts/setup_grobid.sh: line 12: ./gradlew: No such file or directory
cp: cannot stat '/c/Users/User/git/s2orc-pdf2json/pdf2json/grobid/config.yaml': No such file or directory
cp: cannot stat '/c/Users/User/git/s2orc-pdf2json/pdf2json/grobid/grobid.properties': No such file or directory
scripts/setup_grobid.sh: line 22: ./gradlew: No such file or directory
This is the setup_grobid.sh after running it through ShellCheck.net
#!/usr/bin/env bash
# put in your pdf2json directory here
export PDF2JSON_HOME=$HOME/Desktop/s2orc-doc2json-main
# Download Grobid
cd "$HOME" || exit
wget https://github.com/kermitt2/grobid/archive/0.6.1.zip
unzip 0.6.1.zip
rm 0.6.1.zip
cd "$HOME"/Desktop/s2orc-doc2json-main/grobid-0.6.1 || exit
./gradlew clean install
## Grobid configurations
# increase max.connections to slightly more than number of processes
# decrease logging level
# this isn't necessary but is nice to have if you are processing lots of files
cp "$PDF2JSON_HOME"/pdf2json/grobid/config.yaml "$HOME"/grobid-0.6.1/grobid-service/config/config.yaml
cp "$PDF2JSON_HOME"/pdf2json/grobid/grobid.properties "$HOME"/grobid-0.6.1/grobid-home/config/grobid.properties
## Start Grobid
./gradlew run
I even tried to --no-check-certificate but still got the same error.
edit: I'm using Wget 1.11.4 / OpenSSL 1.1.1q 5 Jul 2022
Telling by
OpenSSL: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
this might be caused by github droping support for ancient TLS version protocols https://github.blog/2018-02-01-crypto-removal-notice/ and a fairly outdated wget+openssl installation.
Try forcing a specific modern TLS protocol and see how it goes
wget --secure-protocol=TLSv1_2 https://github.com/kermitt2/grobid/archive/0.6.1.zip
or try to upgrade your installation
As a rule of thumb, start your scripts with
set -ex
So that they