rgt
HTML in gt is displaying correctly in windows but not linux
I am creating a gt with custom html. The gt renders correctly on my local windows machine, but when restoring using renv on a Red Hat Linux 7 server the html no longer renders correctly.
library(tidyverse)
library(gt)
df <- tibble::tribble(
~region, ~site, ~overall, ~baseline, ~direction,
"Upper North", "Site A", 49.1, 49.2, "Down",
"Upper North", "Site B", 47.8, 48.1, "Down",
"Upper North", "Site C", 1, 48.2, "Down",
"Upper North", "Site D", 0, 50.7, "Down",
"Central North", "Site E", 79.3, 84, "Down",
"Central North", "Site F", 48.4, 89.2, "Down",
"Central North", "Site G", 52.3, 64.5, "Down",
"Central North", "Site H", 57.1, 45.1, "Up",
"Central North", "Site I", 0, 59.4, "Down",
"Lower North", "Site J", 41.5, 53.9, "Down",
"Lower North", "Site K", 55.2, 64.5, "Down",
"Upper South", "Site L", 37.1, 40, "Down",
"Central South", "Site M", 22.2, 52.3, "Down",
"Central South", "Site N", 4.3, 34, "Down",
"Lower South", "Site O", 0, 82.1, "Down",
"Lower South", "Site P", 35.3, 43.1, "Down",
"Specialty Products", "Site Q", 47.8, 55.8, "Down",
"Specialty Products", "Site R", 60.8, 56, "Up"
)
assign_arrow <- function(direction) {
if(direction == "Up") {
return("<div> <span style='color:red'> <big><big><big><big><big> ⬆</big></big></big></big></big> </div>")
} else {
return("<div> <span style ='color:green'> <big><big><big><big><big>⬇</big></big></big></big></big> </div>")
}
}
combine_text <- function(direction, site, overall, baseline) {
arrow_image <- assign_arrow(direction)
overall = paste0(as.character(overall), "%")
baseline = paste0("Baseline: ", as.character(baseline), "%")
glue::glue(
"{arrow_image}
<div> <span style='font-weight:bold;'>{site}</div>
<div> <span style='font-weight:bold;'>{overall}</div>
<div> <span style='font-weight:bold;'>{baseline}</div>
"
)
}
df3 <- df %>%
dplyr::rowwise() %>%
mutate(text_string = combine_text(direction, site, overall, baseline)) %>%
select(region, text_string) %>%
ungroup() %>%
mutate(text_string = map(text_string, gt::html)) %>%
group_by(region) %>%
mutate(dummy = dplyr::row_number(),
text_string = map(text_string, gt::html)) %>%
tidyr::pivot_wider(names_from = dummy, values_from = text_string) %>%
ungroup() %>%
gt() %>%
tab_options(column_labels.hidden = TRUE)
Created on 2022-06-28 by the reprex package (v2.0.1)
Windows Session infosessioninfo::session_info()
#> - Session info ---------------------------------------------------------------
#> setting value
#> version R version 3.6.3 (2020-02-29)
#> os Windows 10 x64 (build 19043)
#> system x86_64, mingw32
#> ui RTerm
#> language (EN)
#> collate English_New Zealand.1252
#> ctype English_New Zealand.1252
#> tz Pacific/Auckland
#> date 2022-06-28
#> pandoc 2.17.1.1 @ C:/Users/mcindoer/AppData/Local/Programs/RStudio/bin/quarto/bin/ (via rmarkdown)
#>
#> - Packages -------------------------------------------------------------------
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#> checkmate 2.1.0 2022-04-21 [1] CRAN (R 3.6.3)
#> cli 3.3.0 2022-04-25 [1] CRAN (R 3.6.3)
#> colorspace 2.0-3 2022-02-21 [1] CRAN (R 3.6.3)
#> crayon 1.5.1 2022-03-26 [1] CRAN (R 3.6.3)
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#> dbplyr 2.1.1 2021-04-06 [1] CRAN (R 3.6.3)
#> digest 0.6.29 2021-12-01 [1] CRAN (R 3.6.3)
#> dplyr * 1.0.9 2022-04-28 [1] CRAN (R 3.6.3)
#> ellipsis 0.3.2 2021-04-29 [1] CRAN (R 3.6.3)
#> evaluate 0.15 2022-02-18 [1] CRAN (R 3.6.3)
#> fansi 1.0.3 2022-03-24 [1] CRAN (R 3.6.3)
#> fastmap 1.1.0 2021-01-25 [1] CRAN (R 3.6.3)
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#> fs 1.5.2 2021-12-08 [1] CRAN (R 3.6.3)
#> generics 0.1.2 2022-01-31 [1] CRAN (R 3.6.3)
#> ggplot2 * 3.3.6 2022-05-03 [1] CRAN (R 3.6.3)
#> glue 1.6.2 2022-02-24 [1] CRAN (R 3.6.3)
#> gt * 0.3.1 2021-08-07 [1] CRAN (R 3.6.3)
#> gtable 0.3.0 2019-03-25 [1] CRAN (R 3.6.3)
#> haven 2.5.0 2022-04-15 [1] CRAN (R 3.6.3)
#> highr 0.9 2021-04-16 [1] CRAN (R 3.6.3)
#> hms 1.1.1 2021-09-26 [1] CRAN (R 3.6.3)
#> htmltools 0.5.2 2021-08-25 [1] CRAN (R 3.6.3)
#> httr 1.4.3 2022-05-04 [1] CRAN (R 3.6.3)
#> jsonlite 1.8.0 2022-02-22 [1] CRAN (R 3.6.3)
#> knitr 1.39 2022-04-26 [1] CRAN (R 3.6.3)
#> lifecycle 1.0.1 2021-09-24 [1] CRAN (R 3.6.3)
#> lubridate 1.8.0 2021-10-07 [1] CRAN (R 3.6.3)
#> magrittr 2.0.3 2022-03-30 [1] CRAN (R 3.6.3)
#> modelr 0.1.8 2020-05-19 [1] CRAN (R 3.6.3)
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#> pillar 1.7.0 2022-02-01 [1] CRAN (R 3.6.3)
#> pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 3.6.3)
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#> R6 2.5.1 2021-08-19 [1] CRAN (R 3.6.3)
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#> stringi 1.7.6 2021-11-29 [1] CRAN (R 3.6.3)
#> stringr * 1.4.0 2019-02-10 [1] CRAN (R 3.6.3)
#> tibble * 3.1.7 2022-05-03 [1] CRAN (R 3.6.3)
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#> tidyselect 1.1.2 2022-02-21 [1] CRAN (R 3.6.3)
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#> vctrs 0.4.1 2022-04-13 [1] CRAN (R 3.6.3)
#> withr 2.5.0 2022-03-03 [1] CRAN (R 3.6.3)
#> xfun 0.30 2022-03-02 [1] CRAN (R 3.6.3)
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#> yaml 2.3.5 2022-02-21 [1] CRAN (R 3.6.3)
#>
#> [1] C:/working/ioc_cip_report/renv/library/R-3.6/x86_64-w64-mingw32
#> [2] C:/Program Files/R/R-3.6.3/library
#>
#> ------------------------------------------------------------------------------
Linux Session info
sessioninfo::session_info()
#> - Session info ---------------------------------------------------------------
#> setting value
#> version R version 3.5.2 (2018-12-20)
#> os Red Hat Enterprise Linux
#> system x86_64, linux-gnu
#> ui RStudio
#> language (EN)
#> collate en_US.UTF-8
#> ctype en_US.UTF-8
#> tz Pacific/Auckland
#> date 2022-06-28
#> rstudio 1.1.456 (server)
#> pandoc 1.19.2.1 @ /usr/lib/rstudio-server/bin/pandoc/ (via rmarkdown)
#>
#> ! package * version date (UTC) lib source
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#> 2 evaluate 0.15 2022-02-18 [?] CRAN (R 3.5.2)
#> 2 fansi 1.0.3 2022-03-24 [?] CRAN (R 3.5.2)
#> 2 fastmap 1.1.0 2021-01-25 [?] CRAN (R 3.5.2)
#> 2 forcats * 0.5.1 2021-01-27 [?] CRAN (R 3.5.2)
#> 2 fs 1.5.2 2021-12-08 [?] CRAN (R 3.5.2)
#> 2 generics 0.1.2 2022-01-31 [?] CRAN (R 3.5.2)
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#> 2 haven 2.5.0 2022-04-15 [?] CRAN (R 3.5.2)
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#>
#> [1] u/apps/Rcode/ioc_cip_report/renv/library/R-3.5/x86_64-linux-gnu
#> [2] usr/lib64/R/library
#>
#> ------------------------------------------------------------------------------
On Windows: Windows output
On Linux: Linux output
Solution
I work with OP, and I have done some more digging into the problem. It appears to be a problem with gt::html running on Rv3.5.2 (even on Windows).
I used Rv3.6.3 to successfully create the output.
I then ran renv::init() then renv::snapshot().
I then switched to Rv3.5.2 and ran renv::restore()
Then the output did not display correctly.
A simpler example of the correct output on R 3.6.3:
What the output from R 3.5.2 is:
Reprex from R 3.6.3
library(dplyr)
#>
#> Attaching package: 'dplyr'
#> The following objects are masked from 'package:stats':
#>
#> filter, lag
#> The following objects are masked from 'package:base':
#>
#> intersect, setdiff, setequal, union
library(tibble)
library(gt)
library(purrr)
df <- tibble::tribble(~x,
"<div><span style ='color:green'><big>⬇</big></div>") %>%
mutate(x = map(x, gt::html)) %>%
gt()
Created on 2022-06-28 by the reprex package (v2.0.1)
Session infosessionInfo()
#> R version 3.6.3 (2020-02-29)
#> Platform: x86_64-w64-mingw32/x64 (64-bit)
#> Running under: Windows 10 x64 (build 19042)
#>
#> Matrix products: default
#>
#> locale:
#> [1] LC_COLLATE=English_New Zealand.1252 LC_CTYPE=English_New Zealand.1252
#> [3] LC_MONETARY=English_New Zealand.1252 LC_NUMERIC=C
#> [5] LC_TIME=English_New Zealand.1252
#>
#> attached base packages:
#> [1] stats graphics grDevices utils datasets methods base
#>
#> other attached packages:
#> [1] purrr_0.3.4 gt_0.6.0 tibble_3.1.6 dplyr_1.0.8
#>
#> loaded via a namespace (and not attached):
#> [1] pillar_1.7.0 compiler_3.6.3 highr_0.9 tools_3.6.3
#> [5] digest_0.6.27 checkmate_2.0.0 evaluate_0.15 lifecycle_1.0.1
#> [9] gtable_0.3.0 pkgconfig_2.0.3 rlang_1.0.2 reprex_2.0.1
#> [13] cli_3.3.0 rstudioapi_0.13 yaml_2.3.5 xfun_0.31
#> [17] fastmap_1.1.0 withr_2.5.0 stringr_1.4.0 knitr_1.39
#> [21] generics_0.1.0 fs_1.5.2 vctrs_0.3.8 grid_3.6.3
#> [25] tidyselect_1.1.1 glue_1.6.2 R6_2.5.1 fansi_0.4.2
#> [29] rmarkdown_2.14 ggplot2_3.3.5 magrittr_2.0.2 backports_1.2.1
#> [33] scales_1.1.1 ellipsis_0.3.2 htmltools_0.5.2 colorspace_2.0-1
#> [37] utf8_1.2.1 stringi_1.6.2 munsell_0.5.0 crayon_1.5.0
Reprex from R 3.5.2
library(dplyr)
#>
#> Attaching package: 'dplyr'
#> The following objects are masked from 'package:stats':
#>
#> filter, lag
#> The following objects are masked from 'package:base':
#>
#> intersect, setdiff, setequal, union
library(tibble)
library(gt)
library(purrr)
#> Warning: package 'purrr' was built under R version 3.5.3
df <- tibble::tribble(~x,
"<div><span style ='color:green'><big>⬇</big></div>") %>%
mutate(x = map(x, gt::html)) %>%
gt()
Created on 2022-06-28 by the reprex package (v2.0.1)
Session infosessioninfo::session_info()
#> - Session info ---------------------------------------------------------------
#> setting value
#> version R version 3.5.2 (2018-12-20)
#> os Windows 10 x64 (build 19042)
#> system x86_64, mingw32
#> ui RTerm
#> language (EN)
#> collate English_New Zealand.1252
#> ctype English_New Zealand.1252
#> tz Pacific/Auckland
#> date 2022-06-28
#> pandoc 2.17.1.1 @ C:/Program Files/RStudio/bin/quarto/bin/ (via rmarkdown)
#>
#> - Packages -------------------------------------------------------------------
#> package * version date (UTC) lib source
#> assertthat 0.2.1 2019-03-21 [2] CRAN (R 3.5.3)
#> backports 1.2.1 2020-12-09 [1] CRAN (R 3.5.2)
#> checkmate 2.0.0 2020-02-06 [1] CRAN (R 3.5.3)
#> cli 3.3.0 2022-04-25 [2] CRAN (R 3.5.2)
#> colorspace 2.0-1 2021-05-04 [1] CRAN (R 3.5.2)
#> crayon 1.5.0 2022-02-14 [1] CRAN (R 3.5.2)
#> DBI 1.1.3 2022-06-18 [2] CRAN (R 3.5.2)
#> digest 0.6.27 2020-10-24 [1] CRAN (R 3.5.2)
#> dplyr * 1.0.8 2022-02-08 [1] CRAN (R 3.5.2)
#> ellipsis 0.3.2 2021-04-29 [2] CRAN (R 3.5.2)
#> evaluate 0.15 2022-02-18 [2] CRAN (R 3.5.2)
#> fansi 0.4.2 2021-01-15 [1] CRAN (R 3.5.2)
#> fastmap 1.1.0 2021-01-25 [2] CRAN (R 3.5.2)
#> fs 1.5.2 2021-12-08 [2] CRAN (R 3.5.2)
#> generics 0.1.0 2020-10-31 [1] CRAN (R 3.5.2)
#> ggplot2 3.3.5 2021-06-25 [1] CRAN (R 3.5.2)
#> glue 1.6.2 2022-02-24 [2] CRAN (R 3.5.2)
#> gt * 0.6.0 2022-05-24 [2] CRAN (R 3.5.2)
#> gtable 0.3.0 2019-03-25 [2] CRAN (R 3.5.3)
#> highr 0.9 2021-04-16 [2] CRAN (R 3.5.2)
#> htmltools 0.5.2 2021-08-25 [2] CRAN (R 3.5.2)
#> knitr 1.39 2022-04-26 [2] CRAN (R 3.5.2)
#> lifecycle 1.0.1 2021-09-24 [2] CRAN (R 3.5.2)
#> magrittr 2.0.2 2022-01-26 [1] CRAN (R 3.5.2)
#> munsell 0.5.0 2018-06-12 [2] CRAN (R 3.5.3)
#> pillar 1.7.0 2022-02-01 [2] CRAN (R 3.5.2)
#> pkgconfig 2.0.3 2019-09-22 [2] CRAN (R 3.5.3)
#> purrr * 0.3.4 2020-04-17 [2] CRAN (R 3.5.3)
#> R6 2.5.1 2021-08-19 [2] CRAN (R 3.5.2)
#> reprex 2.0.1 2021-08-05 [2] CRAN (R 3.5.2)
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- Rcpp Rf_warningcall compiler warnings
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